BLASTX nr result

ID: Coptis24_contig00019186 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019186
         (695 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]        245   7e-63
gb|ABA95319.1| retrotransposon protein, putative, unclassified [...   243   3e-62
gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]     241   8e-62
gb|ABF98227.1| retrotransposon protein, putative, unclassified [...   237   2e-60
gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]     237   2e-60

>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa Japonica Group]
          Length = 1586

 Score =  245 bits (625), Expect = 7e-63
 Identities = 118/230 (51%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
 Frame = -1

Query: 695  QWVKWLSLAEWWFNTNFHTSLKMSPFTALYGYTPPHL---AIPPTVSTPIAAVKDYLRQR 525
            +W  WL+LAEWW+NT +HTS++M+PF ALYGY PP +   ++P  VS         + Q+
Sbjct: 1360 RWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFSVPCNVSEEARVT---IEQK 1416

Query: 524  QSMVELIKDGLCKAQERMKYFADKKRTDRSFVVGDWVYLKLQPYRQTTVSIRRSLKLSAK 345
             ++++ +K  L +AQ R+K++AD+ R++R+  VGD VYLKLQPYRQT   IR SLKL +K
Sbjct: 1417 DAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPYRQTAFGIRGSLKLRSK 1476

Query: 344  FYGPFQVADRVGKVAYRLNLPTASKIHPVFHVSQLKKKLGSXXXXXXXXXXVAHSGQLLM 165
            FYGPF++ ++VG+VAY+L LP  S IHPVFHVSQLKK +GS          V   GQ+  
Sbjct: 1477 FYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAVPMANLPSVGPDGQIKT 1536

Query: 164  EPVAILACRIIPRNNQAVTQVLIQWSHTSPEDATWEDWSNISTHFPQFNP 15
            EPVA+L  R+IPR   AVTQ L+ W + SP +ATWED S I + FP FNP
Sbjct: 1537 EPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQSMFPSFNP 1586


>gb|ABA95319.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 955

 Score =  243 bits (619), Expect = 3e-62
 Identities = 120/229 (52%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
 Frame = -1

Query: 692  WVKWLSLAEWWFNTNFHTSLKMSPFTALYGYTPPHLA---IPPTVSTPIAAVKDYLRQRQ 522
            W  W++LAEWW+NT +HT+++M+PF ALYGY+PP ++   +P  VS         L +++
Sbjct: 730  WCSWIALAEWWYNTTYHTAIQMTPFKALYGYSPPQISEFSVPCDVSQEARVT---LEEKE 786

Query: 521  SMVELIKDGLCKAQERMKYFADKKRTDRSFVVGDWVYLKLQPYRQTTVSIRRSLKLSAKF 342
            ++V+ +K  +  AQ RMKY+AD+ RT+R   VGD VYLKLQPYRQ    IR SLKL  K+
Sbjct: 787  TIVQKLKASMEDAQRRMKYYADRNRTERKLEVGDMVYLKLQPYRQNAFGIRGSLKLRGKY 846

Query: 341  YGPFQVADRVGKVAYRLNLPTASKIHPVFHVSQLKKKLGSXXXXXXXXXXVAHSGQLLME 162
            YGPF+V ++VG VAYRL LP  + IHPVFHVSQLKK LG+          V   GQ+  E
Sbjct: 847  YGPFKVLEKVGAVAYRLQLPEEAAIHPVFHVSQLKKHLGTHAVPMPNLPAVGPDGQIKTE 906

Query: 161  PVAILACRIIPRNNQAVTQVLIQWSHTSPEDATWEDWSNISTHFPQFNP 15
            PVA+L  R+IPRNN AVTQ LI WS+ +P +ATWED S I   FP F P
Sbjct: 907  PVAVLQRRMIPRNNVAVTQWLILWSNLTPAEATWEDASYIQKVFPNFQP 955


>gb|AAV24812.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1475

 Score =  241 bits (616), Expect = 8e-62
 Identities = 115/230 (50%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
 Frame = -1

Query: 695  QWVKWLSLAEWWFNTNFHTSLKMSPFTALYGYTPPHL---AIPPTVSTPIAAVKDYLRQR 525
            +W  WL+LAEWW+NT FHT+++M+PF A+YGY+PP +   ++P  +S         + ++
Sbjct: 1249 KWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQINEFSVPCNISEEARVT---IEEK 1305

Query: 524  QSMVELIKDGLCKAQERMKYFADKKRTDRSFVVGDWVYLKLQPYRQTTVSIRRSLKLSAK 345
            ++++  +K+ L  AQ RMKYFADK RT+R+  VGD VYLKL+PYRQ+   IR SLKL +K
Sbjct: 1306 EAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYRQSAFGIRGSLKLRSK 1365

Query: 344  FYGPFQVADRVGKVAYRLNLPTASKIHPVFHVSQLKKKLGSXXXXXXXXXXVAHSGQLLM 165
            FYGPF+V  ++G++AY+L LP  ++IHPVFHVSQLKK LG           V   GQ+  
Sbjct: 1366 FYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLGKHAIPMSNLPSVGPDGQIKT 1425

Query: 164  EPVAILACRIIPRNNQAVTQVLIQWSHTSPEDATWEDWSNISTHFPQFNP 15
            EP+A+L  R++PR   AVTQ LI W + SP +ATWED S I   FP FNP
Sbjct: 1426 EPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEATWEDASVIQAMFPSFNP 1475


>gb|ABF98227.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1160

 Score =  237 bits (604), Expect = 2e-60
 Identities = 115/230 (50%), Positives = 154/230 (66%), Gaps = 3/230 (1%)
 Frame = -1

Query: 695  QWVKWLSLAEWWFNTNFHTSLKMSPFTALYGYTPPHL---AIPPTVSTPIAAVKDYLRQR 525
            +W KWL  AEWW+NT++HTSL+++ + A+YG TPPH+   AIP  VS    A    ++QR
Sbjct: 934  EWYKWLPTAEWWYNTSYHTSLQVTSYEAMYGVTPPHIGERAIPGNVSEEARAT---VQQR 990

Query: 524  QSMVELIKDGLCKAQERMKYFADKKRTDRSFVVGDWVYLKLQPYRQTTVSIRRSLKLSAK 345
            + M+  +K+ L KAQ R+K   D+ R++R F +GD VYLK+QPYRQ    +R SLKL AK
Sbjct: 991  EDMLARLKENLAKAQTRIKKLVDRLRSERQFELGDMVYLKMQPYRQNAFGLRGSLKLRAK 1050

Query: 344  FYGPFQVADRVGKVAYRLNLPTASKIHPVFHVSQLKKKLGSXXXXXXXXXXVAHSGQLLM 165
            FYGPF+V +++GKVAY+L LP  + IHPVFHVSQLKK +G           V   G +  
Sbjct: 1051 FYGPFRVLEKIGKVAYKLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADGTVKT 1110

Query: 164  EPVAILACRIIPRNNQAVTQVLIQWSHTSPEDATWEDWSNISTHFPQFNP 15
            EP+A+LA R+IPR N+ V Q LI W + +PEDATWE+ + I   FP F P
Sbjct: 1111 EPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFRP 1160


>gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1246

 Score =  237 bits (604), Expect = 2e-60
 Identities = 115/230 (50%), Positives = 154/230 (66%), Gaps = 3/230 (1%)
 Frame = -1

Query: 695  QWVKWLSLAEWWFNTNFHTSLKMSPFTALYGYTPPHL---AIPPTVSTPIAAVKDYLRQR 525
            +W KWL  AEWW+NT++HTSL+++ + A+YG TPPH+   AIP  VS    A    ++QR
Sbjct: 1020 EWYKWLPTAEWWYNTSYHTSLQVTSYEAMYGVTPPHIGERAIPGNVSEEARAT---VQQR 1076

Query: 524  QSMVELIKDGLCKAQERMKYFADKKRTDRSFVVGDWVYLKLQPYRQTTVSIRRSLKLSAK 345
            + M+  +K+ L KAQ R+K   D+ R++R F +GD VYLK+QPYRQ    +R SLKL AK
Sbjct: 1077 EDMLARLKENLAKAQTRIKKLVDRLRSERQFELGDMVYLKMQPYRQNAFGLRGSLKLRAK 1136

Query: 344  FYGPFQVADRVGKVAYRLNLPTASKIHPVFHVSQLKKKLGSXXXXXXXXXXVAHSGQLLM 165
            FYGPF+V +++GKVAY+L LP  + IHPVFHVSQLKK +G           V   G +  
Sbjct: 1137 FYGPFRVLEKIGKVAYKLQLPEEANIHPVFHVSQLKKHVGRQAIPLPNLPLVGADGTVKT 1196

Query: 164  EPVAILACRIIPRNNQAVTQVLIQWSHTSPEDATWEDWSNISTHFPQFNP 15
            EP+A+LA R+IPR N+ V Q LI W + +PEDATWE+ + I   FP F P
Sbjct: 1197 EPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFRP 1246


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