BLASTX nr result
ID: Coptis24_contig00019178
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00019178 (684 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P82244.1|RK34_SPIOL RecName: Full=50S ribosomal protein L34, ... 101 1e-19 ref|XP_002522558.1| 50S ribosomal protein L34, chloroplast precu... 93 6e-17 ref|NP_001238013.1| uncharacterized protein LOC100500433 [Glycin... 92 7e-17 ref|XP_004134668.1| PREDICTED: 50S ribosomal protein L34, chloro... 90 4e-16 ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloro... 90 4e-16 >sp|P82244.1|RK34_SPIOL RecName: Full=50S ribosomal protein L34, chloroplastic; AltName: Full=CL34; Flags: Precursor gi|189096152|pdb|3BBO|4 Chain 4, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|7578860|gb|AAF64157.1|AF238221_1 plastid ribosomal protein L34 precursor [Spinacia oleracea] Length = 152 Score = 101 bits (252), Expect = 1e-19 Identities = 63/133 (47%), Positives = 73/133 (54%) Frame = -2 Query: 587 RAPSASLSFLAGTRTPTSSIRLGTTSTRSGLLHCXXXXXXXXXXXXXXXXXXXXGINFSV 408 R PSASL+F+ G+RT + S RSG LHC + S Sbjct: 18 RTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLSSNFSGLSLGLDLT-SN 76 Query: 407 SNVKTRKRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXRAILKRRRAKGRK 228 + V T + VV AG+AALCLTKRSRSRKSLA RA+LKRRRAKGRK Sbjct: 77 TGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRK 136 Query: 227 ILCTKTNPNSGVR 189 ILCTKTNP+SG R Sbjct: 137 ILCTKTNPSSGKR 149 >ref|XP_002522558.1| 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis] gi|223538249|gb|EEF39858.1| 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis] Length = 161 Score = 92.8 bits (229), Expect = 6e-17 Identities = 60/133 (45%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Frame = -2 Query: 587 RAPSASLSFLAGTRTPT--SSIRLGTTSTRSGLLHCXXXXXXXXXXXXXXXXXXXXGINF 414 R PSASLS GTR S + +++RSGLLHC Sbjct: 26 RCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFSGLSLGLDLN 85 Query: 413 SVSNVKTRKRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXRAILKRRRAKG 234 S + V+ + G VV AG+AALC TKR+RSRKSLA RA+LKRRRAKG Sbjct: 86 SSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKG 145 Query: 233 RKILCTKTNPNSG 195 RK+LCTK+NPNSG Sbjct: 146 RKVLCTKSNPNSG 158 >ref|NP_001238013.1| uncharacterized protein LOC100500433 [Glycine max] gi|255630327|gb|ACU15520.1| unknown [Glycine max] Length = 146 Score = 92.4 bits (228), Expect = 7e-17 Identities = 65/136 (47%), Positives = 79/136 (58%), Gaps = 5/136 (3%) Frame = -2 Query: 587 RAPSASLSFLAGTRTPTS-SIRLGTT--STRSGLLHCXXXXXXXXXXXXXXXXXXXXGIN 417 RAP+ S S + T P+S S+ L T S RS LLHC G++ Sbjct: 11 RAPTPSASLILTTPKPSSLSLNLTRTCSSARSPLLHCSFLSSPSHLSSPSSVSGLSLGLD 70 Query: 416 FSVSNVKTR--KRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXRAILKRRR 243 + SNV T+ K SG VV AG+AALCLTKRSRSRKSLA RA+L+RRR Sbjct: 71 LT-SNVGTKRGKGSGLVVRAGKAALCLTKRSRSRKSLARTHGFRKRMSTPGGRAVLRRRR 129 Query: 242 AKGRKILCTKTNPNSG 195 AKGR++LCTKT+PNSG Sbjct: 130 AKGRRVLCTKTHPNSG 145 >ref|XP_004134668.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Cucumis sativus] gi|449479241|ref|XP_004155546.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Cucumis sativus] Length = 155 Score = 90.1 bits (222), Expect = 4e-16 Identities = 63/136 (46%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Frame = -2 Query: 587 RAPSASLSFLAGTRTPTSSIRLGTT---STRSGLLHCXXXXXXXXXXXXXXXXXXXXGIN 417 R PSASL F G+R S+ L T S RSGLLHC Sbjct: 20 RVPSASLVFSTGSRG-YCSVSLNTVNNNSARSGLLHCSFLPSSSLSCSSSFSGLSLGLDW 78 Query: 416 FSVSNVKTRKRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXRAILKRRRAK 237 S V K G VV AG+AALC TKR+RSRKSLA RA+LKRRRAK Sbjct: 79 SSKVGVGQGKGRGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAK 138 Query: 236 GRKILCTKTNPNSGVR 189 GRK+LCTK+NP+SG R Sbjct: 139 GRKVLCTKSNPSSGKR 154 >ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Vitis vinifera] Length = 148 Score = 90.1 bits (222), Expect = 4e-16 Identities = 62/135 (45%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Frame = -2 Query: 581 PSASLSFLAGT-RTPTSSIRLGTTSTRSGLLHC-XXXXXXXXXXXXXXXXXXXXGINFSV 408 PSASLS LAG+ R +S+ + T LLHC +N Sbjct: 16 PSASLSLLAGSKRRSLASLNMRNNPTSPALLHCSFTPTVSLSFPSSFSGLSLGLDLN--- 72 Query: 407 SNVKTRKRSGH--VVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXRAILKRRRAKG 234 S+V RK GH VV AG+AALC TKR+RSRKSLA RA+LKRRRAKG Sbjct: 73 SSVGVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKG 132 Query: 233 RKILCTKTNPNSGVR 189 RK+LCTK+NP+SG R Sbjct: 133 RKVLCTKSNPSSGKR 147