BLASTX nr result

ID: Coptis24_contig00019117 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019117
         (577 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635065.1| PREDICTED: uncharacterized protein LOC100233...    69   7e-10
ref|XP_002304995.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
gb|AFK42939.1| unknown [Medicago truncatula]                           63   4e-08
ref|XP_002524694.1| conserved hypothetical protein [Ricinus comm...    59   8e-07

>ref|XP_003635065.1| PREDICTED: uncharacterized protein LOC100233117 [Vitis vinifera]
          Length = 89

 Score = 68.6 bits (166), Expect = 7e-10
 Identities = 39/93 (41%), Positives = 53/93 (56%)
 Frame = +1

Query: 178 ISLR*TNRVLYEHNMKVMKGIKEQAVTKCEASVNKYSIKETSHSRSNELRRFCSVXXXXX 357
           +SLR   RV+Y+  M+VM G+K+QA +KC+ ++        S S S + RRF        
Sbjct: 1   MSLRCLGRVVYQAGMRVMLGMKDQA-SKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAA 59

Query: 358 XXXXXXXXXGDEKLKHAEESLRMVMYLSCWGPN 456
                     +E+LK +EESLR VMYLSCWGPN
Sbjct: 60  FKAVKN---AEERLKQSEESLRTVMYLSCWGPN 89


>ref|XP_002304995.1| predicted protein [Populus trichocarpa] gi|222847959|gb|EEE85506.1|
           predicted protein [Populus trichocarpa]
          Length = 87

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 39/93 (41%), Positives = 54/93 (58%)
 Frame = +1

Query: 178 ISLR*TNRVLYEHNMKVMKGIKEQAVTKCEASVNKYSIKETSHSRSNELRRFCSVXXXXX 357
           +SLR  +RVLY+  ++V++G+K+QA +KC++S  K        S S + RRF        
Sbjct: 1   MSLRYASRVLYQSGVRVVQGMKDQA-SKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSA 59

Query: 358 XXXXXXXXXGDEKLKHAEESLRMVMYLSCWGPN 456
                     +EK K AEESLR VM+LSCWGPN
Sbjct: 60  YMNAK-----NEKFKQAEESLRTVMFLSCWGPN 87


>gb|AFK42939.1| unknown [Medicago truncatula]
          Length = 89

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 36/93 (38%), Positives = 57/93 (61%)
 Frame = +1

Query: 178 ISLR*TNRVLYEHNMKVMKGIKEQAVTKCEASVNKYSIKETSHSRSNELRRFCSVXXXXX 357
           +SLR   RVLY+  M+  +G+K+Q+ +KC++++   S+++++ S+  + R F +      
Sbjct: 1   MSLRYIGRVLYQTAMRTFQGMKDQS-SKCDSTIK--SLRDSTSSKQVKARVFSNNTAFEN 57

Query: 358 XXXXXXXXXGDEKLKHAEESLRMVMYLSCWGPN 456
                     D K+K AEESLR VMYLSCWGPN
Sbjct: 58  SSSAFKGSNSD-KVKRAEESLRTVMYLSCWGPN 89


>ref|XP_002524694.1| conserved hypothetical protein [Ricinus communis]
           gi|223536055|gb|EEF37713.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 82

 Score = 58.5 bits (140), Expect = 8e-07
 Identities = 37/93 (39%), Positives = 51/93 (54%)
 Frame = +1

Query: 178 ISLR*TNRVLYEHNMKVMKGIKEQAVTKCEASVNKYSIKETSHSRSNELRRFCSVXXXXX 357
           +SLR  +RV+Y+  M+ ++G+K++A           S+ E++ S S + RRF        
Sbjct: 1   MSLRYASRVMYQAGMRALQGMKDKA---------SKSLTESAAS-SKQARRFSGATAVDS 50

Query: 358 XXXXXXXXXGDEKLKHAEESLRMVMYLSCWGPN 456
                     D KLK AEESLR VMYLSCWGPN
Sbjct: 51  DALSKSAAKND-KLKKAEESLRTVMYLSCWGPN 82


Top