BLASTX nr result

ID: Coptis24_contig00019094 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019094
         (227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65190.1| hypothetical protein VITISV_032101 [Vitis vinifera]    64   1e-08
ref|XP_002266998.1| PREDICTED: RNA polymerase II transcriptional...    64   1e-08
emb|CBI34506.3| unnamed protein product [Vitis vinifera]               64   1e-08
dbj|BAB41214.1| putative transcriptional coactivator [Brassica r...    55   6e-06

>emb|CAN65190.1| hypothetical protein VITISV_032101 [Vitis vinifera]
          Length = 320

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/47 (61%), Positives = 40/47 (85%)
 Frame = +1

Query: 85  EMEPEMETQITETVISILKNSDMNEMTEFKVRKMAGDKLGFDLSSPE 225
           +MEPE   +I +TV+ ILK++DM+EMTEFKVRK+A DKLG +LS+P+
Sbjct: 78  KMEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPD 124


>ref|XP_002266998.1| PREDICTED: RNA polymerase II transcriptional coactivator KELP-like
           [Vitis vinifera]
          Length = 187

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +1

Query: 88  MEPEMETQITETVISILKNSDMNEMTEFKVRKMAGDKLGFDLSSPE 225
           MEPE   +I +TV+ ILK++DM+EMTEFKVRK+A DKLG +LS+P+
Sbjct: 1   MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPD 46


>emb|CBI34506.3| unnamed protein product [Vitis vinifera]
          Length = 142

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +1

Query: 88  MEPEMETQITETVISILKNSDMNEMTEFKVRKMAGDKLGFDLSSPE 225
           MEPE   +I +TV+ ILK++DM+EMTEFKVRK+A DKLG +LS+P+
Sbjct: 1   MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPD 46


>dbj|BAB41214.1| putative transcriptional coactivator [Brassica rapa]
          Length = 165

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +1

Query: 88  MEPEMETQITETVISILKNSDMNEMTEFKVRKMAGDKLGFDLS 216
           ME E + +I ETV  ILK SDM EMTEFKVR +A ++LG DLS
Sbjct: 1   MEEESKAKIEETVREILKESDMTEMTEFKVRNLASERLGIDLS 43


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