BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019069
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              150   1e-34
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   150   1e-34
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   145   3e-33
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   145   3e-33
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   141   6e-32

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  150 bits (378), Expect = 1e-34
 Identities = 68/134 (50%), Positives = 100/134 (74%)
 Frame = -2

Query: 403  LQILQSVFPDHFDSLGERYIVNQGEILKFDFNRDMVESLFNEIISSVFLDNGSKEALNVF 224
            LQILQ+  P +FD +GER+ +++  ILK D+NRD+++SL NEI++S+F + G  E L  F
Sbjct: 602  LQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFF 661

Query: 223  NSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSIQEISSLLHRLRSRHNELVELQVR 44
            +S+QPLLMENLF EG+SV L+DFS+P    +++  ++++ISSLL+ LRS +NEL++LQ  
Sbjct: 662  DSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAE 721

Query: 43   NHLTSVKAPAVNFL 2
            NHL   K P  NF+
Sbjct: 722  NHLRLTKVPVANFI 735


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  150 bits (378), Expect = 1e-34
 Identities = 68/134 (50%), Positives = 100/134 (74%)
 Frame = -2

Query: 403 LQILQSVFPDHFDSLGERYIVNQGEILKFDFNRDMVESLFNEIISSVFLDNGSKEALNVF 224
           LQILQ+  P +FD +GER+ +++  ILK D+NRD+++SL NEI++S+F + G  E L  F
Sbjct: 542 LQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFF 601

Query: 223 NSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSIQEISSLLHRLRSRHNELVELQVR 44
           +S+QPLLMENLF EG+SV L+DFS+P    +++  ++++ISSLL+ LRS +NEL++LQ  
Sbjct: 602 DSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAE 661

Query: 43  NHLTSVKAPAVNFL 2
           NHL   K P  NF+
Sbjct: 662 NHLRLTKVPVANFI 675


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score =  145 bits (367), Expect = 3e-33
 Identities = 71/134 (52%), Positives = 96/134 (71%)
 Frame = -2

Query: 403 LQILQSVFPDHFDSLGERYIVNQGEILKFDFNRDMVESLFNEIISSVFLDNGSKEALNVF 224
           LQILQ+V P  FD  G+ Y++     LKFDF+RD + SL NEI++S+F   G +E L  F
Sbjct: 542 LQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFF 601

Query: 223 NSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSIQEISSLLHRLRSRHNELVELQVR 44
           +S+QPLLME++F EG+SV L D+S+P +F + L  +IQ +S LL++LRS  NELVELQ+ 
Sbjct: 602 DSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLE 661

Query: 43  NHLTSVKAPAVNFL 2
           NHL SVK P  NF+
Sbjct: 662 NHLRSVKVPFTNFI 675


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score =  145 bits (367), Expect = 3e-33
 Identities = 71/134 (52%), Positives = 96/134 (71%)
 Frame = -2

Query: 403 LQILQSVFPDHFDSLGERYIVNQGEILKFDFNRDMVESLFNEIISSVFLDNGSKEALNVF 224
           LQILQ+V P  FD  G+ Y++     LKFDF+RD + SL NEI++S+F   G +E L  F
Sbjct: 572 LQILQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFF 631

Query: 223 NSVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSIQEISSLLHRLRSRHNELVELQVR 44
           +S+QPLLME++F EG+SV L D+S+P +F + L  +IQ +S LL++LRS  NELVELQ+ 
Sbjct: 632 DSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLE 691

Query: 43  NHLTSVKAPAVNFL 2
           NHL SVK P  NF+
Sbjct: 692 NHLRSVKVPFTNFI 705


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  141 bits (355), Expect = 6e-32
 Identities = 69/133 (51%), Positives = 92/133 (69%)
 Frame = -2

Query: 400 QILQSVFPDHFDSLGERYIVNQGEILKFDFNRDMVESLFNEIISSVFLDNGSKEALNVFN 221
           QILQ   P  F+  GER+++N   +LK DFNRD+V S+ NEI+ S+F + GS   L  FN
Sbjct: 463 QILQMALPTCFNCSGERFLINNSNVLKVDFNRDVVASMINEILISIFFEKGSGAVLKFFN 522

Query: 220 SVQPLLMENLFLEGYSVCLKDFSVPKSFFEDLPMSIQEISSLLHRLRSRHNELVELQVRN 41
           ++QPLLMENLF EG+SV LKDFS+ ++  + +  S + IS LL  LRS +NELVELQV N
Sbjct: 523 ALQPLLMENLFSEGFSVSLKDFSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQVEN 582

Query: 40  HLTSVKAPAVNFL 2
           H+  VK P + F+
Sbjct: 583 HIQDVKTPVLEFI 595