BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019056
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinif...   137   1e-30
ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arab...   136   2e-30
ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi...   127   1e-27
ref|XP_003593883.1| F-box protein SKIP19 [Medicago truncatula] g...   126   2e-27
ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycin...   126   3e-27

>ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera]
           gi|147853333|emb|CAN82327.1| hypothetical protein
           VITISV_041807 [Vitis vinifera]
           gi|297740788|emb|CBI30970.3| unnamed protein product
           [Vitis vinifera]
          Length = 321

 Score =  137 bits (345), Expect = 1e-30
 Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
 Frame = -1

Query: 561 RKITKDPQLFCSICIPREWKYLSKLALNAY--EKLVIESVDRSCGQLVTFSCDFPVTDDL 388
           RK+ ++P ++ +I    +   L  L    Y  E++   +VDRS GQL++   D   TD+L
Sbjct: 52  RKLCREPMMWRNI----DMHNLGDLCDLGYDLEEMARHAVDRSGGQLLSICIDDFATDNL 107

Query: 387 LHYVVDRSNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIKQVGKFCP 208
           L+Y++DRS+ ++ LRL +CY ISD+G    ++ LPLL E++L    FSK+V++ +G+ CP
Sbjct: 108 LNYIIDRSSHIRHLRLVSCYGISDDGLSEGIKRLPLLVEIDLCYCSFSKEVLEAIGQCCP 167

Query: 207 KLKYLRLTEKRVRNVWNRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDGLRAILDGC 28
           +LK  RL  +       R+  + C++EA  IA++MP L  L LF N L N+GL AILDGC
Sbjct: 168 RLKSFRLNCQGF-----RHPHIECDEEALAIAQNMPGLKSLQLFGNKLTNNGLLAILDGC 222

Query: 27  PRLEYLDLR 1
             LE LDLR
Sbjct: 223 CHLESLDLR 231


>ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp.
           lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein
           ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]
          Length = 610

 Score =  136 bits (343), Expect = 2e-30
 Identities = 85/189 (44%), Positives = 110/189 (58%), Gaps = 2/189 (1%)
 Frame = -1

Query: 561 RKITKDPQLFCSICIPREWKYLSKLALNAYEKLVI--ESVDRSCGQLVTFSCDFPVTDDL 388
           R++ KDP ++  I    +   L  L    Y+  ++   +VDRS G LV     +  TD+L
Sbjct: 379 RRVCKDPSMWRKI----DMDNLGDLGAMGYDLEIMCRHAVDRSQGGLVEIDIWYFGTDEL 434

Query: 387 LHYVVDRSNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIKQVGKFCP 208
           L+Y+ DRS+ L+ LRL  CY I+D GFI AV  LPL+E LEL     S + +K VG+ CP
Sbjct: 435 LNYIADRSSNLRTLRLIMCYPIADEGFIEAVVKLPLIEYLELSHCSLSGESLKVVGQSCP 494

Query: 207 KLKYLRLTEKRVRNVWNRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDGLRAILDGC 28
            LK L+L  +        N     N+EA  IAESMP+L  L LF N L N GL AILDGC
Sbjct: 495 NLKTLKLNSEPDPKF---NDDEFNNEEALAIAESMPELRHLQLFGNILTNVGLNAILDGC 551

Query: 27  PRLEYLDLR 1
           P LE+LDLR
Sbjct: 552 PHLEHLDLR 560



 Score =  112 bits (281), Expect = 3e-23
 Identities = 78/197 (39%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
 Frame = -1

Query: 561 RKITKDPQLFCSICIPREW-KYLSKLALNAYEKLVIESVDRSCGQLVTFSCDFPVTDDLL 385
           R++ KDP ++  I I     + + K  L++   +   +VDRS G L+    ++  TD LL
Sbjct: 41  RRVCKDPSMWRKIVIDNSGNRDIFKYDLDS---MCRHAVDRSQGGLLEIDIEYFGTDKLL 97

Query: 384 HYVVDR--------SNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIK 229
            Y+ DR        S+ L+ LRL  C+ I+D G   AV  LPLLE+LE+    FS + + 
Sbjct: 98  DYIADRFSLSLFSISSNLRSLRLVRCHQITDKGVAEAVVKLPLLEDLEVSYCSFSGECLS 157

Query: 228 QVGKFCPKLKYLRLTEK-RVRNVWNRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDG 52
            VG+ CP L  L+L  + RV  V N          A  IAESMP+L  L L  NAL N G
Sbjct: 158 VVGQSCPHLTTLKLNRRPRVEFVINMRDH-----NAIAIAESMPELRHLQLLGNALTNTG 212

Query: 51  LRAILDGCPRLEYLDLR 1
           L AILD C  L++LDLR
Sbjct: 213 LNAILDSCTHLDHLDLR 229


>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
           gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
           protein SKIP19-like [Cucumis sativus]
          Length = 311

 Score =  127 bits (319), Expect = 1e-27
 Identities = 81/189 (42%), Positives = 107/189 (56%), Gaps = 2/189 (1%)
 Frame = -1

Query: 561 RKITKDPQLFCSICI--PREWKYLSKLALNAYEKLVIESVDRSCGQLVTFSCDFPVTDDL 388
           RKI +DP ++  I +  P +W  +        E+L  ++V RSCGQL+ F+ +   TDDL
Sbjct: 49  RKICEDPLMWRVIDMRYPCDWWDMDY----NLEELCRQAVKRSCGQLIHFNIEHFGTDDL 104

Query: 387 LHYVVDRSNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIKQVGKFCP 208
           L Y+    N L  LRL  C  ISD G + AV  LPLLE+LEL    F  + ++ +G+ CP
Sbjct: 105 LLYITQSCNQLSRLRLVYCNRISDEGLVEAVSKLPLLEDLELSFCSFDVETLETLGQNCP 164

Query: 207 KLKYLRLTEKRVRNVWNRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDGLRAILDGC 28
            LK L+L  +  R       +V C+  A  IAE+MP L  L +F N L N GL AILDGC
Sbjct: 165 GLKSLKLNRQFYR-------RVECDKGALAIAENMPNLRHLHIFGNNLTNKGLEAILDGC 217

Query: 27  PRLEYLDLR 1
             LE LDLR
Sbjct: 218 SALESLDLR 226


>ref|XP_003593883.1| F-box protein SKIP19 [Medicago truncatula]
           gi|355482931|gb|AES64134.1| F-box protein SKIP19
           [Medicago truncatula]
          Length = 325

 Score =  126 bits (317), Expect = 2e-27
 Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
 Frame = -1

Query: 561 RKITKDPQLFCSICIPREWKYLSKLALNAYEKLVIESVDRSCGQLVTFSCDFPVTDDLLH 382
           RKI+KDP LF +I +P   +   +L L   E L   +VD SCG ++  + ++  TDDLLH
Sbjct: 56  RKISKDPFLFRTINMPNLGEPDYQLDL---ETLCQRAVDYSCGHIIDINIEYFGTDDLLH 112

Query: 381 YVVDRSNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIKQVGKFCPKL 202
            + + ++ L+ LRL +C+ ISD G   A    P LEEL++     S ++ + +G+ CP+L
Sbjct: 113 RIANSASHLQRLRLASCWSISDEGLCDAAEKFPCLEELDISISNLSDRLFEPIGRRCPRL 172

Query: 201 KYLRLTEKRVRNVW----NRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDGLRAILD 34
           K L+   +  R+      + +     ++EAF IA+ MP L  L L  N + NDGL A+LD
Sbjct: 173 KTLKFNSQGYRHPHIQYDDDDEDAYDDNEAFAIAKYMPGLRHLQLIGNEMTNDGLVALLD 232

Query: 33  GCPRLEYLDLR 1
           GCP LE LD+R
Sbjct: 233 GCPHLESLDIR 243


>ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]
          Length = 311

 Score =  126 bits (316), Expect = 3e-27
 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 1/188 (0%)
 Frame = -1

Query: 561 RKITKDPQLFCSICIPREWKYLSKLALNAYEKLVIE-SVDRSCGQLVTFSCDFPVTDDLL 385
           R I+K+P L+ +I    + + L  + L+ +   +   ++D S G L+  + ++  TDDLL
Sbjct: 46  RAISKEPLLWRTI----DMRNLGDIGLDFHLLAMCHRAIDYSSGHLLHINVEYFGTDDLL 101

Query: 384 HYVVDRSNTLKCLRLGACYDISDNGFIGAVRNLPLLEELELWSFYFSKQVIKQVGKFCPK 205
           H++   ++ L+ LRL  CY ISD G       LP LEEL++     +K  ++ +G+ CP 
Sbjct: 102 HHITHSTSNLRSLRLACCYQISDEGLCEIAEKLPQLEELDISISNLTKDPLEAIGQCCPH 161

Query: 204 LKYLRLTEKRVRNVWNRNSQVNCNDEAFGIAESMPQLLRLSLFANALGNDGLRAILDGCP 25
           LK L+   +       R   + C++EAF IAE+MP L  L LF N L N+GL AILDGCP
Sbjct: 162 LKTLKFNMEGY-----RRPHIECDEEAFAIAETMPGLHHLQLFGNKLTNEGLLAILDGCP 216

Query: 24  RLEYLDLR 1
            LE LDLR
Sbjct: 217 LLESLDLR 224