BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019003
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II su...   234   6e-60
ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II su...   229   2e-58
ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Sela...   228   4e-58
ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycin...   228   5e-58
ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 ...   228   6e-58

>ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
           vinifera] gi|147769002|emb|CAN66735.1| hypothetical
           protein VITISV_024186 [Vitis vinifera]
           gi|296083263|emb|CBI22899.3| unnamed protein product
           [Vitis vinifera]
          Length = 114

 Score =  234 bits (597), Expect = 6e-60
 Identities = 103/110 (93%), Positives = 108/110 (98%)
 Frame = -3

Query: 545 KFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAA 366
           KFCRECNNILYPKED+EQKILLYACRNCDHQE A+NNCVYRNE+HHSVGERTQVLQDVAA
Sbjct: 5   KFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQDVAA 64

Query: 365 DPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 216
           DPTLPRTKSVRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 65  DPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|XP_004134242.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
           [Cucumis sativus] gi|449517969|ref|XP_004166016.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB9-like [Cucumis sativus]
          Length = 114

 Score =  229 bits (585), Expect = 2e-58
 Identities = 100/110 (90%), Positives = 107/110 (97%)
 Frame = -3

Query: 545 KFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAA 366
           KFCRECNNILYPKED+++KILLYACRNCDHQE ADNNCVYRNE+HH+VGERTQVLQDVAA
Sbjct: 5   KFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAA 64

Query: 365 DPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 216
           DPTLPRTK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 65  DPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
           gi|302811122|ref|XP_002987251.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300145148|gb|EFJ11827.1| hypothetical protein
           SELMODRAFT_125489 [Selaginella moellendorffii]
           gi|300156045|gb|EFJ22675.1| hypothetical protein
           SELMODRAFT_232741 [Selaginella moellendorffii]
          Length = 115

 Score =  228 bits (582), Expect = 4e-58
 Identities = 100/110 (90%), Positives = 106/110 (96%)
 Frame = -3

Query: 545 KFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAA 366
           KFCRECNNILYPKED++QKILLYACRNCDHQE ADNNCVYRNEVHHS GERTQVLQDVA+
Sbjct: 5   KFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEVHHSAGERTQVLQDVAS 64

Query: 365 DPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 216
           DPTLPRTKSVRC +C HGEAVFFQAT+RGEEGMTLFFVCCNPNCG+RWRD
Sbjct: 65  DPTLPRTKSVRCVRCKHGEAVFFQATTRGEEGMTLFFVCCNPNCGYRWRD 114


>ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
           gi|255627167|gb|ACU13928.1| unknown [Glycine max]
          Length = 114

 Score =  228 bits (581), Expect = 5e-58
 Identities = 100/110 (90%), Positives = 107/110 (97%)
 Frame = -3

Query: 545 KFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAA 366
           KFCRECNNILYPKED++QK+LL+ACRNCDHQE ADN CVYRNE+HHSVGERTQVLQDVAA
Sbjct: 5   KFCRECNNILYPKEDRDQKVLLFACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAA 64

Query: 365 DPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 216
           DPTLPRTKSVRC+QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 65  DPTLPRTKSVRCSQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|XP_003594777.1| DNA-directed RNA polymerase II subunit RPB9 [Medicago truncatula]
           gi|87240462|gb|ABD32320.1| DNA-directed RNA polymerase,
           subunit C11/M/9 [Medicago truncatula]
           gi|217075262|gb|ACJ85991.1| unknown [Medicago
           truncatula] gi|355483825|gb|AES65028.1| DNA-directed RNA
           polymerase II subunit RPB9 [Medicago truncatula]
           gi|388497558|gb|AFK36845.1| unknown [Medicago
           truncatula]
          Length = 114

 Score =  228 bits (580), Expect = 6e-58
 Identities = 101/110 (91%), Positives = 105/110 (95%)
 Frame = -3

Query: 545 KFCRECNNILYPKEDKEQKILLYACRNCDHQEPADNNCVYRNEVHHSVGERTQVLQDVAA 366
           KFCRECNNILYPKED+EQKILLYACRNCDHQE ADN CVYRNE+HHSV ERTQVLQDVAA
Sbjct: 5   KFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAA 64

Query: 365 DPTLPRTKSVRCTQCNHGEAVFFQATSRGEEGMTLFFVCCNPNCGFRWRD 216
           DPTLPRTK+VRC QCNHGEAVFFQAT+RGEEGMTLFFVCCNPNCG RWRD
Sbjct: 65  DPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114