BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018884
         (1417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine...   137   9e-30
ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|2...   133   1e-28
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   132   3e-28
ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus ...   131   4e-28
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   129   2e-27

>ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 392

 Score =  137 bits (344), Expect = 9e-30
 Identities = 103/369 (27%), Positives = 174/369 (47%), Gaps = 9/369 (2%)
 Frame = +1

Query: 1    KYLIKFRCVSKTWLKLLKSDIHFINLHFHRSIQSNHSSLLLIRKHHGIKETDFYHADXXX 180
            K L++FR  SK+W  L+ S  HF ++H  RS+    ++ L++R    + +T+F   D   
Sbjct: 20   KSLLRFRSTSKSWKSLIDSQ-HFNSVHLSRSLSLTSNTTLILRLDSDLYQTNFPTLDP-- 76

Query: 181  XXXXXXXXXXPLYLEFPILPDFWYPPPC---DHPIIGMCNGLLCLTTHCDKPFSNVYVWN 351
                      PL+L  P++        C   +  ++G CNGLLC++   D    ++  WN
Sbjct: 77   ----------PLFLNHPLM--------CYSNNITLLGSCNGLLCISNVAD----DIAFWN 114

Query: 352  PLTNVYITIPCPSIPSYFCLKNYCYKNNKVIRYAFGFHQGSNEYKLLRFMYVLPTSEQTF 531
            P    +  +P   +P      +      +V  Y FGF   S +YKL+R  Y +   +++F
Sbjct: 115  PSLRQHRILPSLPLPRRRLHPDTTLFAARV--YGFGFDHTSPDYKLVRISYFVDLQDRSF 172

Query: 532  QTDVSLYTLGGSGVWKTLDSVSYYINALEP--ALVNGFLHWISPLYYNSIEK-IIVSFDI 702
             + V LYTL  +  WKTL S+ Y +         V   LHW+        +  +IV+FD+
Sbjct: 173  DSQVKLYTLRANA-WKTLPSMPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIVAFDL 231

Query: 703  KDEVFHEILMPK-GFNYDDYEMQAGELGGSLCIFGRLYEWEVEVWVMKEYGVVGSWTKLY 879
              E+F E+ +P  G     +E+    LG SLC+    +  +++VWVM+EY    SW KL+
Sbjct: 232  THEIFTELPLPDTGGVGGGFEIDVALLGDSLCMTVNFHNSKMDVWVMREYNRGDSWCKLF 291

Query: 880  KVGRAEIEGEFFYLEPLGVANSGEIIAWKNGLELLLYNPKTNLIRTLEKFG--VRFSKAY 1053
             +  +     F  L PLG ++ G  +  ++  + L +        TL +       ++A 
Sbjct: 292  TLEESRELRSFKCLRPLGYSSDGNKVLLEHDRKRLCWYDLGKKEVTLVRIQGLPNLNEAM 351

Query: 1054 TFIGSLVSP 1080
              +G+LV+P
Sbjct: 352  ICLGTLVTP 360


>ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|222839337|gb|EEE77674.1|
            predicted protein [Populus trichocarpa]
          Length = 374

 Score =  133 bits (335), Expect = 1e-28
 Identities = 109/378 (28%), Positives = 174/378 (46%), Gaps = 14/378 (3%)
 Frame = +1

Query: 1    KYLIKFRCVSKTWLKLLKSDIHFINLHFHRSIQ---SNHSSLLLIRKHH-GIKETDFYHA 168
            K L++F+CVSKTW  L+ S   F+  H  R+ +   +NH  + L    H  I    ++ A
Sbjct: 23   KCLVRFKCVSKTWRSLI-SHPEFVKNHLKRTKEDTNANHYKIFLSTDPHLSIDPEAYFDA 81

Query: 169  DXXXXXXXXXXXXXPLYLEFPILPDFWYPPPCDHPIIGMCNGLLCLTTHCDKPFSNVYVW 348
            D                L+FP+     YP      I+G CNGL+C   H D P   +Y+W
Sbjct: 82   DDNLLTTQ---------LKFPVS----YPEYSYIEILGSCNGLVCGLIH-DNPL--IYIW 125

Query: 349  NPLTNVY--ITIPCPSIPSYFCLKNYCYKNNKVIRYAFGFHQGSNEYKLLRFMYVLPTSE 522
            NP T     + IP  S    F              Y FG+    ++YK++R      T+ 
Sbjct: 126  NPSTRESRELAIPGSSEDDAF--------------YGFGYDVKLDDYKIVRVSISTSTNS 171

Query: 523  ---QTFQTDVSLYTLGGSGVWKTLDSVSYYINALEPA-LVNGFLHWISPLYYNSIEK-II 687
                  +T V ++TL  S +W+T+  +   +    P  L NG LHW+        +K ++
Sbjct: 172  TDGSNSETKVEVFTLK-SNIWRTIQDLRCSVLLEGPGTLANGALHWLVRQENGGSKKCVM 230

Query: 688  VSFDIKDEVFHEILMPKGFNYDD--YEMQAGELGGSLCIFGRLYEWEVEVWVMKEYGVVG 861
            VSFD+ +E F E++  +G   DD  ++++   LG  LC++   Y    E W+MKEY    
Sbjct: 231  VSFDLSEEKFLEMVPLRGLTEDDSSWDLELKVLGDWLCLYSH-YGLICEAWIMKEYSSEA 289

Query: 862  SWTKLYKVGRAEIEGEFFYLEPLGVANSGEIIAWKNGLELLLYNPKTNLIRTLEKFGV-R 1038
            SWT+  +     I G  ++   L V  +G ++   +G E++ YNP  +  R    +    
Sbjct: 290  SWTRFLRFNGESIPGGKYWFRLLWVTKNGNVVYDLDGREVVFYNPDEDTARPFIIYHEGD 349

Query: 1039 FSKAYTFIGSLVSPKVIN 1092
            + ++  +I SLVSP  I+
Sbjct: 350  WFESTAYIESLVSPNNIS 367


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  132 bits (331), Expect = 3e-28
 Identities = 108/400 (27%), Positives = 194/400 (48%), Gaps = 14/400 (3%)
 Frame = +1

Query: 1    KYLIKFRCVSKTWLKLLKSDIHFINLHFHRSIQSNHSSLLLIRKHHGIKETDFYHADXXX 180
            K L+  R VSK W  L+    +F+ LH   S+ ++ +  +++R    +   DF       
Sbjct: 19   KELLCCRSVSKPWCALIDGP-NFVKLHLKHSMDTSSNLYIILRTTSHVHYMDFEQ----- 72

Query: 181  XXXXXXXXXXPLYLEFPILPDFWYPPPCDH---PIIGMCNGLLCLTTHCDKPFSNVYVWN 351
                       +  +   L +  +P  C +    ++G  NGLLC++   D    ++ VWN
Sbjct: 73   ---------NLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVD----DIAVWN 119

Query: 352  PLTNVYITIPCPSIPSYFCLKNYC-YKNNKVIRYAFGFHQGSNEYKLLRFMYVLPTSEQT 528
            P T  +  +P   I     LK Y   K+  V  + FG+    ++YKL+R        +++
Sbjct: 120  PSTRKHRVVPFLPIE----LKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRS 175

Query: 529  FQTDVSLYTLGGSGVWKTLDSVSYYIN--ALEPALVNGFLHWI---SPLYYNSIEKIIVS 693
            F+++V +Y+L     W+ +  + Y ++         NG LHW+   +P   +++  I+V+
Sbjct: 176  FESEVKVYSLRKQS-WRRIGDMPYCVHYPGANGVFANGALHWVVGENP--ESNVANIVVA 232

Query: 694  FDIKDEVFHEILMPKGFNYDDYEMQAGELGGSLCIFGRLYEWEVEVWVMKEYGVVGSWTK 873
             D+  E + E+L P+ +   ++ +  G L G LC         V+VW+MKEYGV  SWTK
Sbjct: 233  LDLGVEDYREVLQPE-YKDKNFYIDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTK 291

Query: 874  LYKVGRAEIEGEFFYLEPLGVANSG-EIIAWKNGLELLLYNPKTNLIRTLEKFGVRFS-K 1047
            L+ V + E+ G    L+PL  + SG E++   + L+L  Y+ K   ++     G+ +S +
Sbjct: 292  LFSVAQYEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKNRIP-GIPYSFE 350

Query: 1048 AYTFIGSLVS---PKVINGVTLSDTLRI*KNAEDKKTRAD 1158
            A TF+ SL+S    + ++G T  D     ++++D+  R D
Sbjct: 351  ADTFVESLISVSPNRHLDGRTQDDD----EDSKDRNKRDD 386


>ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223540440|gb|EEF42009.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 369

 Score =  131 bits (330), Expect = 4e-28
 Identities = 99/370 (26%), Positives = 167/370 (45%), Gaps = 5/370 (1%)
 Frame = +1

Query: 1    KYLIKFRCVSKTWLKLLKSDIHFINLHFHRSIQSNHSSLLLIRKHHGIKETDFYHADXXX 180
            K+LI+F+CV +TW  L+ SD  F  LH  R +Q  +  L     H  +   D + +    
Sbjct: 23   KHLIQFKCVCRTWQYLISSDPEFAKLHLERVLQVTNVHL-----HRLLLSADPFQSVDME 77

Query: 181  XXXXXXXXXXPLYLEFPILPDFWYPPPCDHPIIGMCNGLLCLTTHCDKPFSNVYVWNPLT 360
                           FP+      P   D   +G CNGL+      D     + VWNP T
Sbjct: 78   AYCDADDNFLIREHRFPVRN----PEDDDFEFVGSCNGLISAVFGSDH---EITVWNPST 130

Query: 361  NVYITIPCPSIPSYFCLKNYCYKNNKVIRYAFGFHQGSNEYKLLRFMYVLPTSEQTFQTD 540
                 +P P+  +              + Y FG+    ++YK++R      +S    +  
Sbjct: 131  GESRKLPAPTSST-----------EDKLFYGFGYDSKLDDYKIVRGA----SSASCNEVQ 175

Query: 541  VSLYTLGGSGVWKTLDSVSYYINALEPAL-VNGFLHWISPLYYNSIEKIIVSFDIKDEVF 717
            + ++ L G+  W+ + ++   +     A+ +NG LHW+       +  +IVS D+ +E F
Sbjct: 176  MEVFNLKGNR-WRAIQNLHCNVRFQGSAIALNGILHWLVDQLNEGL--MIVSLDLAEEKF 232

Query: 718  HEILMPKGFNYDDYEMQAGELGGSLCIFGRLYEWEVEVWVMKEYGVVGSWTKLYKVGRAE 897
             E+++   +  +++  +   LG SL +    +    E W +K YG   SW KL+      
Sbjct: 233  LEMVVLPDYVTENWGTELKVLGDSLSVCSSSHTTNFEAWTVKGYGSKASWLKLFSFNSDP 292

Query: 898  IEGEFFYLEPLGVANSGEIIAWKNGLELLLYNPKTNLIRTLEKFGV----RFSKAYTFIG 1065
            + G  ++L  L VA +G ++    GLE+++YNPK    +TL++F V     + +A T+I 
Sbjct: 293  LPGCKYWLNVLWVAKNGNVLLNYEGLEIIVYNPKE---QTLKQFNVPNNWHWFEAITYIE 349

Query: 1066 SLVSPKVING 1095
            SLVSP   NG
Sbjct: 350  SLVSPNAGNG 359


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
            gi|355511583|gb|AES92725.1| F-box family protein
            [Medicago truncatula]
          Length = 392

 Score =  129 bits (324), Expect = 2e-27
 Identities = 106/400 (26%), Positives = 182/400 (45%), Gaps = 14/400 (3%)
 Frame = +1

Query: 1    KYLIKFRCVSKTWLKLLKSDIHFINLHFHRSIQSNHSSLLLIRKHHGIKETDFYHADXXX 180
            K L++ R   K W  L+ S   FI LH  +S      S++++R+H  + E D    D   
Sbjct: 19   KPLLRLRSTCKWWRNLIDST-DFIFLHLSKS----RDSVIILRQHSRLYELDLNSMDRVK 73

Query: 181  XXXXXXXXXXPLYLEFPILPDFWYPPPCDH---PIIGMCNGLLCLTTHCDKPFSNVYVWN 351
                         L+ P++        C      ++G CNGLLC+    D    ++  WN
Sbjct: 74   E------------LDHPLM--------CYSNRIKVLGSCNGLLCICNIAD----DIAFWN 109

Query: 352  PLTNVYITIPCPSIPSYFCLKNYCYKNNKVIR------YAFGFHQGSNEYKLLRFMYVLP 513
            P    +  IP   +     ++    +NN +        Y FG+   +++YKL+   Y + 
Sbjct: 110  PTIRKHRIIPSEPL-----IRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVD 164

Query: 514  TSEQTFQTDVSLYTLGGSGVWKTLDSVSYYINALEP--ALVNGFLHWISPLYYNSIEK-I 684
               ++F + V +YT+  + VWKTL S+ Y +         V+G LHW+         + +
Sbjct: 165  LHNRSFDSHVKIYTMR-TDVWKTLPSMPYALCCARTMGVFVSGALHWVVTRDLEPESRDL 223

Query: 685  IVSFDIKDEVFHEILMPKGFNYDDYEMQAGELGGSLCIFGRLYEWEVEVWVMKEYGVVGS 864
            IV+FD++ EVF E+ +P G     ++M    L G LCI         +VWVM+EYG   S
Sbjct: 224  IVAFDLRFEVFREVALP-GTVDGKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSHDS 282

Query: 865  WTKLYKVGRAEIEGEFFYLEPLGVANSGE-IIAWKNGLELLLYNPKTNLIRTLEKFGVRF 1041
            W K++ VG+         L+PLG + +G+ ++  ++  +L  YN  +  +  +   G+  
Sbjct: 283  WCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNLASKDVSWVRISGIPN 342

Query: 1042 S-KAYTFIGSLVSPKVINGVTLSDTLRI*KNAEDKKTRAD 1158
            S +    +GSLV P ++   ++    +     ++KK R D
Sbjct: 343  SIEGTVCVGSLVKPSLMMNRSVQSKKQKLVEEKNKKKRDD 382