BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018880
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15512.3| unnamed protein product [Vitis vinifera]              130   1e-28
emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]   129   3e-28
ref|XP_002521455.1| pentatricopeptide repeat-containing protein,...   121   5e-26
ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26

>emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  130 bits (326), Expect = 1e-28
 Identities = 58/117 (49%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TRVLLRCQSDPVTSFRFFTWVRNYLSIRLTVTNYCAIVHILTWSRKFHLAMKLLCQVIEI 164
           +RVLLRCQSD  T+  FF WV+N L +R +  NYC +VH L WSR F  AMK LC+++E+
Sbjct: 104 SRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVEL 163

Query: 163 ECND---DDVFDKLVLCSQVCNWSAVVFDMLIKAYVKTSNVKDGLKV*KKMIGMGLV 2
             +D   +DVF  L+LC++ CNW  VVFDML+KAY++   V++GL+  ++M+ +G V
Sbjct: 164 VKDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFV 220


>emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  129 bits (323), Expect = 3e-28
 Identities = 58/117 (49%), Positives = 83/117 (70%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TRVLLRCQSDPVTSFRFFTWVRNYLSIRLTVTNYCAIVHILTWSRKFHLAMKLLCQVIEI 164
           +RVLLRCQSD  T+  FF WV+N L +R +  NYC IVH L WSR F  A+K LC+++E+
Sbjct: 149 SRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVEL 208

Query: 163 ECND---DDVFDKLVLCSQVCNWSAVVFDMLIKAYVKTSNVKDGLKV*KKMIGMGLV 2
             +D   +DVF  L+LC++ CNW  VVFDML+KAY++   V++GL+  ++M+ +G V
Sbjct: 209 VKDDLPGEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFV 265


>ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539354|gb|EEF40945.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  121 bits (304), Expect = 5e-26
 Identities = 54/117 (46%), Positives = 85/117 (72%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TRVLLRCQSDPVTSFRFFTWVRNYLSIRLTVTNYCAIVHILTWSRKFHLAMKLLCQVIEI 164
           +RVLLRCQSD +++  FF+WV+N L ++ ++ NYC +VHIL WS++F  AMK L ++I++
Sbjct: 95  SRVLLRCQSDSISALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKL 154

Query: 163 --ECN-DDDVFDKLVLCSQVCNWSAVVFDMLIKAYVKTSNVKDGLKV*KKMIGMGLV 2
             +C+ ++DVF  L+ C Q CNW  V+FDML+KAYV+   +K+G    +K++ +G V
Sbjct: 155 VKDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCV 211


>ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 636

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/117 (49%), Positives = 82/117 (70%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TRVLLRCQSDPVTSFRFFTWVRNYLSIRLTVTNYCAIVHILTWSRKFHLAMKLLCQVIEI 164
           +++LLRCQS+ V++  FF WV+  L IRL+  NYC I+HIL WSR+F LAMK L ++IE+
Sbjct: 106 SKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIEL 165

Query: 163 E---CNDDDVFDKLVLCSQVCNWSAVVFDMLIKAYVKTSNVKDGLKV*KKMIGMGLV 2
                + +DVF  LVLC++ CNW+ V+F+MLIKAYVK   + +     KKM+ +G V
Sbjct: 166 SKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFV 222


>ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Cucumis sativus]
          Length = 632

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/117 (49%), Positives = 82/117 (70%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TRVLLRCQSDPVTSFRFFTWVRNYLSIRLTVTNYCAIVHILTWSRKFHLAMKLLCQVIEI 164
           +++LLRCQS+ V++  FF WV+  L IRL+  NYC I+HIL WSR+F LAMK L ++IE+
Sbjct: 102 SKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIEL 161

Query: 163 E---CNDDDVFDKLVLCSQVCNWSAVVFDMLIKAYVKTSNVKDGLKV*KKMIGMGLV 2
                + +DVF  LVLC++ CNW+ V+F+MLIKAYVK   + +     KKM+ +G V
Sbjct: 162 SKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFV 218