BLASTX nr result
ID: Coptis24_contig00018770
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00018770 (461 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba] 290 6e-77 emb|CBI18915.3| unnamed protein product [Vitis vinifera] 290 6e-77 ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 290 6e-77 gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t... 290 6e-77 gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri] 290 6e-77 >gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba] Length = 1013 Score = 290 bits (743), Expect = 6e-77 Identities = 142/153 (92%), Positives = 145/153 (94%) Frame = -1 Query: 461 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 282 TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH Sbjct: 311 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 370 Query: 281 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 102 L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS Sbjct: 371 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 430 Query: 101 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTL 3 ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTL Sbjct: 431 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 463 >emb|CBI18915.3| unnamed protein product [Vitis vinifera] Length = 1565 Score = 290 bits (743), Expect = 6e-77 Identities = 142/153 (92%), Positives = 145/153 (94%) Frame = -1 Query: 461 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 282 TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH Sbjct: 437 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 496 Query: 281 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 102 L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS Sbjct: 497 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 556 Query: 101 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTL 3 ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTL Sbjct: 557 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 589 >ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis vinifera] Length = 1848 Score = 290 bits (743), Expect = 6e-77 Identities = 142/153 (92%), Positives = 145/153 (94%) Frame = -1 Query: 461 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 282 TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH Sbjct: 389 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 448 Query: 281 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 102 L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS Sbjct: 449 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 508 Query: 101 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTL 3 ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTL Sbjct: 509 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 541 >gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera] Length = 1010 Score = 290 bits (743), Expect = 6e-77 Identities = 142/153 (92%), Positives = 145/153 (94%) Frame = -1 Query: 461 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 282 TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH Sbjct: 308 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 367 Query: 281 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 102 L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS Sbjct: 368 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 427 Query: 101 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTL 3 ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTL Sbjct: 428 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 460 >gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri] Length = 1010 Score = 290 bits (743), Expect = 6e-77 Identities = 142/153 (92%), Positives = 145/153 (94%) Frame = -1 Query: 461 TVTPYNIEWLKELVENGPHPPHGKTGAKYIIREDGKRLDLRYLKKDSDRHLELGYKVERH 282 TVTPYNIE LKELVE GPHPP GKTGAKYIIREDG+RLDLRYLKK SD HLELGYKVERH Sbjct: 308 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERH 367 Query: 281 LQDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSV 102 L DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS Sbjct: 368 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 427 Query: 101 ETKAEVLELMMVPKCIVSPQSNRPVIAIVQDTL 3 ET+AEVLELMMVPKCIVSPQSNRPV+ IVQDTL Sbjct: 428 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 460