BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018762
         (725 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform...   405   e-111
ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|2...   402   e-110
ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [C...   395   e-108
ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ric...   391   e-107
ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like is...   382   e-104

>ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
           gi|296086584|emb|CBI32219.3| unnamed protein product
           [Vitis vinifera]
          Length = 297

 Score =  405 bits (1042), Expect = e-111
 Identities = 200/241 (82%), Positives = 213/241 (88%)
 Frame = -1

Query: 725 GRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREELFENLKADESIGWAVDII 546
           GRGPVLGPMVYGCLYC+ SY +TLSTL+FADSKTLKEEKREELFENLKADESIGWAVD+I
Sbjct: 23  GRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEEKREELFENLKADESIGWAVDVI 82

Query: 545 DPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVYVDTVGDPEKYRIKLSER 366
           DP ELSAKMLK+ KINLNEISHDSA GL+ RVL +GVLLTEVYVDTVGD EKYRIKLSER
Sbjct: 83  DPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVLLTEVYVDTVGDAEKYRIKLSER 142

Query: 365 FPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETAENMHTKFGSGYPGDPAT 186
           FP+VKFVVAKKADSLYPVVSGASIVAKVTRDRALR+WV  ETAENMH  FGSGYPGDP T
Sbjct: 143 FPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLVETAENMHRNFGSGYPGDPVT 202

Query: 185 KAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEIFWEADLDEESSSDKNGNRRQLKLSS 6
           K+WL  HKHSVFGFPTLVRFSWGTCT Y K +VE+ WEAD  EE  S     +RQLKLSS
Sbjct: 203 KSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWEADKVEEDGSTNRNGKRQLKLSS 262

Query: 5   V 3
           V
Sbjct: 263 V 263


>ref|XP_002311009.1| predicted protein [Populus trichocarpa] gi|222850829|gb|EEE88376.1|
           predicted protein [Populus trichocarpa]
          Length = 297

 Score =  402 bits (1034), Expect = e-110
 Identities = 196/240 (81%), Positives = 214/240 (89%)
 Frame = -1

Query: 725 GRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREELFENLKADESIGWAVDII 546
           GRGPVLGPMVYGCLYC+ SY+ TLSTL FADSKTLKEEKREELFE LKA+E IGWAVD+I
Sbjct: 23  GRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEEKREELFEKLKANELIGWAVDVI 82

Query: 545 DPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVYVDTVGDPEKYRIKLSER 366
           DPRELSAKMLK+ KINLNEISHDSASGLV RVL +GVLLT+VYVDTVGDPEKYRIKLSER
Sbjct: 83  DPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVLLTDVYVDTVGDPEKYRIKLSER 142

Query: 365 FPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETAENMHTKFGSGYPGDPAT 186
           FPS+KFVVAKKADSLYPVVSGASIVAKVTRDRALR+WV DETAENM   FGSGYPGDP T
Sbjct: 143 FPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMTRNFGSGYPGDPET 202

Query: 185 KAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEIFWEADLDEESSSDKNGNRRQLKLSS 6
           K+WL+ H+HSVFGFP+LVRFSWGTCT Y K +VE+ WE+D  EE  S  +  +RQLKLSS
Sbjct: 203 KSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVEVVWESDKTEEDGSSSSSGKRQLKLSS 262


>ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
           gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease
           H2 subunit A-like [Cucumis sativus]
          Length = 297

 Score =  395 bits (1016), Expect = e-108
 Identities = 189/241 (78%), Positives = 213/241 (88%)
 Frame = -1

Query: 725 GRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREELFENLKADESIGWAVDII 546
           GRGPVLGPMVYGCLYC+ SY   LS+L+FADSKTLKEEKREELFE+LKA+ESIGWAVD+I
Sbjct: 23  GRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVI 82

Query: 545 DPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVYVDTVGDPEKYRIKLSER 366
           DPRELS+KML + KINLNEISHDSA GLV +VL +GVLLTEVYVDTVGDPEKYRIKLSE+
Sbjct: 83  DPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVLLTEVYVDTVGDPEKYRIKLSEK 142

Query: 365 FPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETAENMHTKFGSGYPGDPAT 186
           FP++KFVVAKKADSLYPVVSGASIVAKVTRDRALR W  +ETAENMH  FGSGYPGDP T
Sbjct: 143 FPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTT 202

Query: 185 KAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEIFWEADLDEESSSDKNGNRRQLKLSS 6
           K WL+DHKHSVFGFPTLVRFSWGTCT YFK +VE+ WE+D  +E  +     ++QL+LS+
Sbjct: 203 KCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWESDKVDEDGATGGSGKKQLRLSN 262

Query: 5   V 3
           V
Sbjct: 263 V 263


>ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
           gi|223545084|gb|EEF46595.1| ribonuclease hi large
           subunit, putative [Ricinus communis]
          Length = 299

 Score =  391 bits (1004), Expect = e-107
 Identities = 193/241 (80%), Positives = 214/241 (88%), Gaps = 1/241 (0%)
 Frame = -1

Query: 725 GRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREELFENLKADESIGWAVDII 546
           GRGPVLGPMVYGCLYC+ SY+ TLSTLSFADSKTLKE+KREELFENLKA+ESIGWAVD+I
Sbjct: 25  GRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLKEDKREELFENLKANESIGWAVDVI 84

Query: 545 DPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVYVDTVGDPEKYRIKLSER 366
           DPRELSAKML++ KINLNEISH+SA GL+ RVL  GVLLT+VY+DTVGD EKYRIKLSER
Sbjct: 85  DPRELSAKMLQKNKINLNEISHESAIGLITRVLNEGVLLTQVYLDTVGDAEKYRIKLSER 144

Query: 365 FPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETAENMHTKFGSGYPGDPAT 186
           FPS+KFVVAKKADSLYPVVSGASIVAKVTRDRALRNWV +ETAE +   FGSGYPGDP T
Sbjct: 145 FPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVLEETAEGISRNFGSGYPGDPET 204

Query: 185 KAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEIFWEAD-LDEESSSDKNGNRRQLKLS 9
           KAWL  HKH VFGFPTLVRFSWGTC  Y+K  VE+ WE+D +DE+ S + NG +RQLKLS
Sbjct: 205 KAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAVEVLWESDKMDEDDSVNSNG-KRQLKLS 263

Query: 8   S 6
           S
Sbjct: 264 S 264


>ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
          Length = 297

 Score =  382 bits (981), Expect = e-104
 Identities = 190/244 (77%), Positives = 211/244 (86%), Gaps = 3/244 (1%)
 Frame = -1

Query: 725 GRGPVLGPMVYGCLYCSVSYKDTLSTLSFADSKTLKEEKREELFENLKADESIGWAVDII 546
           GRGPVLGPMVYGCLYCS SY  TLSTLSFADSKTLKEEKREELFE LK ++SIGW VD+I
Sbjct: 22  GRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEEKREELFETLKLNDSIGWDVDVI 81

Query: 545 DPRELSAKMLKRTKINLNEISHDSASGLVARVLELGVLLTEVYVDTVGDPEKYRIKLSER 366
           DPRELSAKMLK+ KINLNEISH SA GL+ RVL++GVLLTEVY+DTVGD  KY +KLS  
Sbjct: 82  DPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSNS 141

Query: 365 FPSVKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVPDETAENMHTKFGSGYPGDPAT 186
           FPS+KFVVAKKADSLYPVVSGASIVAKVTRDRALR WV DETAENM   FGSGYPGDP T
Sbjct: 142 FPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRNFGSGYPGDPQT 201

Query: 185 KAWLDDHKHSVFGFPTLVRFSWGTCTPYFKKLVEIFWEAD-LDEE--SSSDKNGNRRQLK 15
           K+WL+DHKH +FGFP+LVRFSWGTC  YFK   E+ WE+D LDE+   S++KNG +RQLK
Sbjct: 202 KSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWESDNLDEDGGGSNNKNG-KRQLK 260

Query: 14  LSSV 3
           LS+V
Sbjct: 261 LSNV 264