BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018691
         (272 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22123.1| polyprotein [Prunus avium]                             143   2e-32
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          138   5e-31
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   132   2e-29
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     130   1e-28
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   128   4e-28

>gb|ABG22123.1| polyprotein [Prunus avium]
          Length = 276

 Score =  143 bits (360), Expect = 2e-32
 Identities = 66/85 (77%), Positives = 79/85 (92%)
 Frame = +2

Query: 2   GYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALWLRGLLDDMGIEQNSVALY 181
           G+VF + G PVSWRS+LQ+TVALSTTEAEYMAV EA+KEA+WL+GLLDD+G++Q+ V +Y
Sbjct: 192 GFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVY 251

Query: 182 CDSQSAIHLAKNQVHHARTKHIDVR 256
           CDSQSAI+LAKNQVHHARTKHIDVR
Sbjct: 252 CDSQSAIYLAKNQVHHARTKHIDVR 276


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  138 bits (347), Expect = 5e-31
 Identities = 61/90 (67%), Positives = 79/90 (87%)
 Frame = +2

Query: 2   GYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALWLRGLLDDMGIEQNSVALY 181
           GYVF + G  VSWRS+LQ+T+ALSTTEAEY+A  EAVKEA+WL+GLL D+G+ Q ++A++
Sbjct: 163 GYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVF 222

Query: 182 CDSQSAIHLAKNQVHHARTKHIDVRYHFIR 271
           CD+QSAI LAKNQ +HARTKHIDV+YH++R
Sbjct: 223 CDNQSAIFLAKNQTYHARTKHIDVKYHYVR 252


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  132 bits (333), Expect = 2e-29
 Identities = 64/90 (71%), Positives = 74/90 (82%)
 Frame = +2

Query: 2    GYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALWLRGLLDDMGIEQNSVALY 181
            G+VF   G  +SW+S LQ  VALSTTEAEYMA+AEAVKEA+WLRGL  +MG EQ++V + 
Sbjct: 1209 GFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVM 1268

Query: 182  CDSQSAIHLAKNQVHHARTKHIDVRYHFIR 271
            CDSQSAI L+KN VHH RTKHIDVRYHFIR
Sbjct: 1269 CDSQSAIALSKNSVHHERTKHIDVRYHFIR 1298


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  130 bits (326), Expect = 1e-28
 Identities = 62/90 (68%), Positives = 69/90 (76%)
 Frame = +2

Query: 2    GYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALWLRGLLDDMGIEQNSVALY 181
            GYVF   G PVSW++ LQA  ALSTTEAEYMA+ EA KEA+WL GL   +G+ Q  V + 
Sbjct: 1169 GYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVK 1228

Query: 182  CDSQSAIHLAKNQVHHARTKHIDVRYHFIR 271
            CDSQSAIHLAKNQV HARTKHID RYH IR
Sbjct: 1229 CDSQSAIHLAKNQVFHARTKHIDARYHRIR 1258


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score =  128 bits (322), Expect = 4e-28
 Identities = 59/90 (65%), Positives = 74/90 (82%)
 Frame = +2

Query: 2   GYVFMMHGAPVSWRSMLQATVALSTTEAEYMAVAEAVKEALWLRGLLDDMGIEQNSVALY 181
           GYVF + G  VSW++ LQ+  ALSTTEAE+MA+ EA KEALW++GL+ D+G+EQ+ V L+
Sbjct: 453 GYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLW 512

Query: 182 CDSQSAIHLAKNQVHHARTKHIDVRYHFIR 271
           CDSQSAI L+KN  HH RTKHIDVRY+FIR
Sbjct: 513 CDSQSAICLSKNSTHHERTKHIDVRYNFIR 542