BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018601
         (910 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    65   6e-14
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    74   4e-11
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    71   4e-10
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ...    71   4e-10
ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256...    48   5e-09

>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 64.7 bits (156), Expect(2) = 6e-14
 Identities = 26/54 (48%), Positives = 37/54 (68%)
 Frame = +3

Query: 243 HNMAIYCWPKSLIYEAERHMRNFLWSGDPYTRKVVTVKWKDVCVPTQEGGLGIK 404
           ++  IY WP+ L+++ +  ++NF+WSGD YT KV TV WK +C P   GGL IK
Sbjct: 277 YSFQIYMWPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIK 330



 Score = 39.3 bits (90), Expect(2) = 6e-14
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 511 GDVVKYHRPSSIWPGINKALKEVDKRTQWLIGEGTKVDFWRVNWV 645
           G  ++++  SS+W GI + L  +   + W++G G  ++ W  NW+
Sbjct: 366 GTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWL 410


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 29/57 (50%), Positives = 42/57 (73%)
 Frame = +3

Query: 243 HNMAIYCWPKSLIYEAERHMRNFLWSGDPYTRKVVTVKWKDVCVPTQEGGLGIKSLV 413
           H M+IY WP  ++ E E+ ++NF+WSGD   RK+VTV W+ +C   +EGGLG+KSL+
Sbjct: 549 HTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLI 605


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = +3

Query: 243 HNMAIYCWPKSLIYEAERHMRNFLWSGDPYTRKVVTVKWKDVCVPTQEGGLGIKSL 410
           H + IY WP  L+ E E   RNF+WSGD   RK+VTV WK +C P  +GGLGI+SL
Sbjct: 455 HTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSL 510


>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
          Length = 161

 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +3

Query: 243 HNMAIYCWPKSLIYEAERHMRNFLWSGDPYTRKVVTVKWKDVCVPTQEGGLGIKSLV 413
           H++ +Y WP SL+ + E+ ++NF+WSGD   RK+VTV WK +C P  +GGL I+SL+
Sbjct: 90  HSITVYNWPTSLLKDLEKSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLI 146


>ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256388 [Vitis vinifera]
          Length = 2667

 Score = 47.8 bits (112), Expect(2) = 5e-09
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +3

Query: 249 MAIYCWPKSLIYEAERHMRNFLWSGDPYTRKVVTVKWKDVCVPTQEGGLGIKSL 410
           ++++  PK +    E+  R+FLW G    +K   V WK VC   ++GGLGI+SL
Sbjct: 813 LSLFVIPKRVCARLEKIQRDFLWGGGALEKKPHLVSWKVVCADKKKGGLGIRSL 866



 Score = 39.3 bits (90), Expect(2) = 5e-09
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 469  WLSTLLRKKDMNNDGDVVKYHRPS---SIWPGINKALKEVDKRTQWLIGEGTKVDFWRVN 639
            W   +L K D+   G   K  R      +W  I K  +     ++++IG+GTKV FW+  
Sbjct: 889  WKQIILSKYDLQEGGWCSKDARNRYGVGVWKAIRKGWENFRSHSRFIIGDGTKVKFWKDL 948

Query: 640  WVRGASI 660
            W    S+
Sbjct: 949  WCGNQSL 955