BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018600
         (677 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   230   2e-58
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...   199   5e-49
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   186   3e-45
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...   184   1e-44
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...   123   3e-26

>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  230 bits (587), Expect = 2e-58
 Identities = 109/201 (54%), Positives = 149/201 (74%)
 Frame = +3

Query: 3   AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 182
           A+ VY +I E GVTV    Y AF + +C+E+PS+ V +L+ ++I +GF P G +LSK + 
Sbjct: 368 AIGVYLVILESGVTVKDGCYHAFVNVLCEEDPSQEVSKLMGEIIGKGFSPCGSKLSKFIT 427

Query: 183 ENCKRGRWKEVEDLLNVILDKGISLDLFSCSSLVEHYCSIGEIDLAVVLNDKIQKIGGTL 362
             CK GRW E +DLLNV ++KG+  D F CS+LVEHYC   +ID ++ L++KI+K+ G+L
Sbjct: 428 SLCKNGRWTEADDLLNVTIEKGLLPDSFCCSALVEHYCRSRQIDSSIALHEKIKKVKGSL 487

Query: 363 DVTTYNVLLIGLLKQRKKGGALQVFDYMRRRNVVSSISFSIMILGLCREREMRKAMEIHD 542
           DV TYNVLL GL  +++   A+ VFD MR +N++SS SF+IM+ GLCRERE+RKAM+ HD
Sbjct: 488 DVATYNVLLNGLFMEKRIEDAVSVFDCMRSQNLLSSTSFTIMVSGLCRERELRKAMKFHD 547

Query: 543 DMLKMGLKPDEATYKHLIAKF 605
           +MLKMGLKPD ATYK LI+ F
Sbjct: 548 EMLKMGLKPDRATYKRLISGF 568


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score =  199 bits (505), Expect = 5e-49
 Identities = 99/201 (49%), Positives = 143/201 (71%)
 Frame = +3

Query: 3   AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 182
           A+ +Y +I EKG+ V  ++Y AF D + +E+  E   E+L D++ RGF P  + LSK + 
Sbjct: 362 AIGLYSLISEKGIRVKDSTYHAFLDLLSEEDQYEEGYEILGDMMRRGFRPGTVGLSKFIL 421

Query: 183 ENCKRGRWKEVEDLLNVILDKGISLDLFSCSSLVEHYCSIGEIDLAVVLNDKIQKIGGTL 362
              ++ RW+EVEDLL+++L+KG+  D   C SLVEHYCS  +ID AV L++K++K+  +L
Sbjct: 422 LLSRKRRWREVEDLLDLVLEKGLLPDSLCCCSLVEHYCSRRQIDKAVALHNKMEKLQASL 481

Query: 363 DVTTYNVLLIGLLKQRKKGGALQVFDYMRRRNVVSSISFSIMILGLCREREMRKAMEIHD 542
           DV TYN+LL GL+K  +    ++VFDYM+   +V+S SF+I I GLCR +EMRKAM++HD
Sbjct: 482 DVATYNILLDGLVKNGRIEEVVRVFDYMKGLKLVNSESFTITIRGLCRAKEMRKAMKLHD 541

Query: 543 DMLKMGLKPDEATYKHLIAKF 605
           +ML MGLKPD+A YK LI +F
Sbjct: 542 EMLDMGLKPDKAAYKRLILEF 562


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  186 bits (473), Expect = 3e-45
 Identities = 88/201 (43%), Positives = 142/201 (70%)
 Frame = +3

Query: 3   AMQVYKMIREKGVTVSHNSYRAFADAICQEEPSEVVDELLKDVIARGFIPHGLELSKLVA 182
           A+ +Y++I E+G+T+  N+  AF D + +++      E+++D++ RGF P    LSK + 
Sbjct: 391 AIGLYQVILERGLTIKDNASDAFVDLLSEKDQYAEGYEIVRDIMRRGFSPCTSSLSKYIT 450

Query: 183 ENCKRGRWKEVEDLLNVILDKGISLDLFSCSSLVEHYCSIGEIDLAVVLNDKIQKIGGTL 362
             CK+ RWKE E+LL ++L+KG+  D  S  SLV+HYCS  + D A+ L++ ++K+  +L
Sbjct: 451 LLCKKRRWKEAEELLYMVLEKGLLPDTLSFCSLVKHYCSSKQTDKALALHNTLEKLQASL 510

Query: 363 DVTTYNVLLIGLLKQRKKGGALQVFDYMRRRNVVSSISFSIMILGLCREREMRKAMEIHD 542
           D+T YN+LL GL+K+ +   +++VFDYM+   + +S SF+++I GLCR +E+RKAM++HD
Sbjct: 511 DITAYNLLLGGLVKEGRVEESIKVFDYMKGLKLANSASFTVIIRGLCRAKELRKAMKLHD 570

Query: 543 DMLKMGLKPDEATYKHLIAKF 605
           +ML MGLKPD+ TYK LI +F
Sbjct: 571 EMLNMGLKPDKPTYKRLILEF 591


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score =  184 bits (467), Expect = 1e-44
 Identities = 97/205 (47%), Positives = 144/205 (70%), Gaps = 4/205 (1%)
 Frame = +3

Query: 3   AMQVYKMIREKGVTVSHNS-YRAFADAICQEE-PSEVVDELLKDVIARGFIPHGLELSKL 176
           A+ VY+MI  KG+TV   S Y  FA+A+C+++  SE  +ELL DVI RGF+P   +LS++
Sbjct: 380 AVDVYRMICRKGITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRGFVPCTHKLSEV 439

Query: 177 VAENCKRGRWKEVEDLLNVILDKGISLDLFSCSSLVEHYCSIGEIDLAVVLNDKIQKIGG 356
           +A  C++ RWK  E LL+ +++  +  D F+C  L+E YC  G+++ A+VL++KI+K+ G
Sbjct: 440 LASMCRKRRWKSAEKLLDSVMEMEVYFDSFACGLLMERYCRSGKLEKALVLHEKIKKMKG 499

Query: 357 TLDVTTYNVLLIGLLKQRKK--GGALQVFDYMRRRNVVSSISFSIMILGLCREREMRKAM 530
           +LDV  YN +L  L+ ++K+    A+ VF+YM+  N V+S SF+IMI GLCR +EM+KAM
Sbjct: 500 SLDVNAYNAVLDRLMMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAM 559

Query: 531 EIHDDMLKMGLKPDEATYKHLIAKF 605
             HD+ML++GLKPD  TYK LI  F
Sbjct: 560 RSHDEMLRLGLKPDLVTYKRLILGF 584


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score =  123 bits (309), Expect = 3e-26
 Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 4/205 (1%)
 Frame = +3

Query: 3   AMQVYKMIREKGVTVSHNS-YRAFADAICQEE-PSEVVDELLKDVIARGFIPHGLELSKL 176
           A+ VY+MI  KG+TV   S Y  FA+A+C+++  SE  +ELL DVI RG      + S L
Sbjct: 380 AVDVYRMICRKGITVLDESCYIEFANALCRDDNSSEEEEELLVDVIKRGKEDGNPQRSFL 439

Query: 177 VAENCKRGRWKEVEDLLNVILDKGISLDLFSCSSLVEHYCSIGEIDLAVVLNDKIQKIGG 356
           +    +  +W+                               G+++ A+VL++KI+K+ G
Sbjct: 440 I----RLWKWRS------------------------------GKLEKALVLHEKIKKMKG 465

Query: 357 TLDVTTYNVLLIGLLKQRKK--GGALQVFDYMRRRNVVSSISFSIMILGLCREREMRKAM 530
           +LDV  YN +L  L+ ++K+    A+ VF+YM+  N V+S SF+IMI GLCR +EM+KAM
Sbjct: 466 SLDVNAYNAVLDRLMMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAM 525

Query: 531 EIHDDMLKMGLKPDEATYKHLIAKF 605
             HD+ML++GLKPD  TYK LI  F
Sbjct: 526 RSHDEMLRLGLKPDLVTYKRLILGF 550