BLASTX nr result
ID: Coptis24_contig00018576
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00018576 (442 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003520658.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3... 124 8e-27 emb|CBI30150.3| unnamed protein product [Vitis vinifera] 123 1e-26 ref|XP_002266033.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3... 123 1e-26 ref|NP_195965.2| transducin/WD40 domain-containing protein [Arab... 123 1e-26 ref|XP_003625697.1| RING finger and WD repeat domain-containing ... 122 2e-26 >ref|XP_003520658.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Glycine max] Length = 631 Score = 124 bits (311), Expect = 8e-27 Identities = 53/118 (44%), Positives = 81/118 (68%) Frame = -1 Query: 442 SSSSSSLEKTIGSQSSEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIRQCD 263 S ++ SL + S +VD C ICMD W++ G+H +CCLPCGH+YG SCI+KW++ Sbjct: 104 SFANGSLSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQH-- 161 Query: 262 KKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAALHEK 89 ++++ KCPQC KC +KD+ KLY SQ+ V+ E QK++ SL+A+ L+ K++ H+K Sbjct: 162 RRNSNKCPQCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKVSNWHKK 219 >emb|CBI30150.3| unnamed protein product [Vitis vinifera] Length = 610 Score = 123 bits (309), Expect = 1e-26 Identities = 56/116 (48%), Positives = 80/116 (68%), Gaps = 3/116 (2%) Frame = -1 Query: 442 SSSSSSLEKTIGSQS---SEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIR 272 SSSS+ E GS ++D CC ICM+ W+S G+HQVCCLPCGH+YG SCI+KW + Sbjct: 84 SSSSNGGETQEGSDGWVQDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQ 143 Query: 271 QCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIA 104 QC +S+ KCPQC +KC ++++ LY S++ VD + +KK+ SL+A+ L+ K A Sbjct: 144 QCG-RSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNA 198 >ref|XP_002266033.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera] Length = 567 Score = 123 bits (309), Expect = 1e-26 Identities = 56/116 (48%), Positives = 80/116 (68%), Gaps = 3/116 (2%) Frame = -1 Query: 442 SSSSSSLEKTIGSQS---SEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIR 272 SSSS+ E GS ++D CC ICM+ W+S G+HQVCCLPCGH+YG SCI+KW + Sbjct: 84 SSSSNGGETQEGSDGWVQDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQ 143 Query: 271 QCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIA 104 QC +S+ KCPQC +KC ++++ LY S++ VD + +KK+ SL+A+ L+ K A Sbjct: 144 QCG-RSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNA 198 >ref|NP_195965.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|7378628|emb|CAB83304.1| putative protein [Arabidopsis thaliana] gi|209529765|gb|ACI49777.1| At5g03450 [Arabidopsis thaliana] gi|332003223|gb|AED90606.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] Length = 630 Score = 123 bits (309), Expect = 1e-26 Identities = 57/143 (39%), Positives = 89/143 (62%), Gaps = 3/143 (2%) Frame = -1 Query: 439 SSSSSLEKTIGSQSSEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIRQCDK 260 SSSS ++ + + + + C+ICM+ W+S G+HQVCCLPCGH+YG+SCI KW +Q + Sbjct: 99 SSSSGSQEDVEWKQGDTEGLSCSICMEVWTSGGQHQVCCLPCGHLYGYSCINKWFQQ--R 156 Query: 259 KSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAALHEKICQ 80 +S KCP C+K C ++D+ K+Y S++A VD E K++L L+A+ ++ K A+ K Q Sbjct: 157 RSGGKCPLCNKICSLRDVRKIYASRVAAVDDEAHKRILFLEAKLRSIEQKTASWSNKEVQ 216 Query: 79 ---DEEEKMCEAASLLENVTSGE 20 E E E L + + + E Sbjct: 217 WKITEAELRLEVTKLKKKIANME 239 >ref|XP_003625697.1| RING finger and WD repeat domain-containing protein [Medicago truncatula] gi|355500712|gb|AES81915.1| RING finger and WD repeat domain-containing protein [Medicago truncatula] Length = 596 Score = 122 bits (307), Expect = 2e-26 Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%) Frame = -1 Query: 442 SSSSSSLEKTIGSQSSE-----VDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKW 278 SS S +E SQ +E +D C ICMD W+++G H +CCLPCGH+YG SC+ KW Sbjct: 103 SSLSIPIESVDCSQENECNRTDIDGLICPICMDAWTNEGDHHICCLPCGHIYGMSCVRKW 162 Query: 277 IRQCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAAL 98 ++Q KK++ KCPQC+++C +KD+ KLY S++ VD E QK + SL+ + L+ K + Sbjct: 163 LQQ--KKNSGKCPQCNRRCSMKDVRKLYASRVVTVDEESQKMIRSLENKCASLESKDGSW 220 Query: 97 HEKICQDEEEKMCEAASLLENV 32 +K EE M A+LL +V Sbjct: 221 RKK----EEGWMKREAALLFDV 238