BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018576
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520658.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3...   124   8e-27
emb|CBI30150.3| unnamed protein product [Vitis vinifera]              123   1e-26
ref|XP_002266033.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3...   123   1e-26
ref|NP_195965.2| transducin/WD40 domain-containing protein [Arab...   123   1e-26
ref|XP_003625697.1| RING finger and WD repeat domain-containing ...   122   2e-26

>ref|XP_003520658.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Glycine max]
          Length = 631

 Score =  124 bits (311), Expect = 8e-27
 Identities = 53/118 (44%), Positives = 81/118 (68%)
 Frame = -1

Query: 442 SSSSSSLEKTIGSQSSEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIRQCD 263
           S ++ SL +     S +VD   C ICMD W++ G+H +CCLPCGH+YG SCI+KW++   
Sbjct: 104 SFANGSLSQENEWASPDVDGLLCPICMDAWTNNGEHHICCLPCGHIYGMSCIKKWLQH-- 161

Query: 262 KKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAALHEK 89
           ++++ KCPQC  KC +KD+ KLY SQ+  V+ E QK++ SL+A+   L+ K++  H+K
Sbjct: 162 RRNSNKCPQCKVKCSLKDVRKLYASQVVAVEEENQKRIRSLEAKCAALESKVSNWHKK 219


>emb|CBI30150.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  123 bits (309), Expect = 1e-26
 Identities = 56/116 (48%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
 Frame = -1

Query: 442 SSSSSSLEKTIGSQS---SEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIR 272
           SSSS+  E   GS      ++D  CC ICM+ W+S G+HQVCCLPCGH+YG SCI+KW +
Sbjct: 84  SSSSNGGETQEGSDGWVQDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQ 143

Query: 271 QCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIA 104
           QC  +S+ KCPQC +KC ++++  LY S++  VD + +KK+ SL+A+   L+ K A
Sbjct: 144 QCG-RSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNA 198


>ref|XP_002266033.1| PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera]
          Length = 567

 Score =  123 bits (309), Expect = 1e-26
 Identities = 56/116 (48%), Positives = 80/116 (68%), Gaps = 3/116 (2%)
 Frame = -1

Query: 442 SSSSSSLEKTIGSQS---SEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIR 272
           SSSS+  E   GS      ++D  CC ICM+ W+S G+HQVCCLPCGH+YG SCI+KW +
Sbjct: 84  SSSSNGGETQEGSDGWVQDQIDGLCCPICMEAWTSGGEHQVCCLPCGHIYGISCIKKWFQ 143

Query: 271 QCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIA 104
           QC  +S+ KCPQC +KC ++++  LY S++  VD + +KK+ SL+A+   L+ K A
Sbjct: 144 QCG-RSSGKCPQCKRKCTLRNVRTLYASRVVAVDEDLRKKIRSLEAKCASLEKKNA 198


>ref|NP_195965.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|7378628|emb|CAB83304.1| putative protein [Arabidopsis
           thaliana] gi|209529765|gb|ACI49777.1| At5g03450
           [Arabidopsis thaliana] gi|332003223|gb|AED90606.1|
           transducin/WD40 domain-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  123 bits (309), Expect = 1e-26
 Identities = 57/143 (39%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
 Frame = -1

Query: 439 SSSSSLEKTIGSQSSEVDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKWIRQCDK 260
           SSSS  ++ +  +  + +   C+ICM+ W+S G+HQVCCLPCGH+YG+SCI KW +Q  +
Sbjct: 99  SSSSGSQEDVEWKQGDTEGLSCSICMEVWTSGGQHQVCCLPCGHLYGYSCINKWFQQ--R 156

Query: 259 KSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAALHEKICQ 80
           +S  KCP C+K C ++D+ K+Y S++A VD E  K++L L+A+   ++ K A+   K  Q
Sbjct: 157 RSGGKCPLCNKICSLRDVRKIYASRVAAVDDEAHKRILFLEAKLRSIEQKTASWSNKEVQ 216

Query: 79  ---DEEEKMCEAASLLENVTSGE 20
               E E   E   L + + + E
Sbjct: 217 WKITEAELRLEVTKLKKKIANME 239


>ref|XP_003625697.1| RING finger and WD repeat domain-containing protein [Medicago
           truncatula] gi|355500712|gb|AES81915.1| RING finger and
           WD repeat domain-containing protein [Medicago
           truncatula]
          Length = 596

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/142 (42%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
 Frame = -1

Query: 442 SSSSSSLEKTIGSQSSE-----VDTACCAICMDYWSSQGKHQVCCLPCGHVYGFSCIEKW 278
           SS S  +E    SQ +E     +D   C ICMD W+++G H +CCLPCGH+YG SC+ KW
Sbjct: 103 SSLSIPIESVDCSQENECNRTDIDGLICPICMDAWTNEGDHHICCLPCGHIYGMSCVRKW 162

Query: 277 IRQCDKKSAAKCPQCSKKCGVKDIIKLYISQIAVVDGEEQKKVLSLQAENEFLKMKIAAL 98
           ++Q  KK++ KCPQC+++C +KD+ KLY S++  VD E QK + SL+ +   L+ K  + 
Sbjct: 163 LQQ--KKNSGKCPQCNRRCSMKDVRKLYASRVVTVDEESQKMIRSLENKCASLESKDGSW 220

Query: 97  HEKICQDEEEKMCEAASLLENV 32
            +K    EE  M   A+LL +V
Sbjct: 221 RKK----EEGWMKREAALLFDV 238