BLASTX nr result
ID: Coptis24_contig00018548
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018548
(1301 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi... 371 e-100
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi... 367 5e-99
ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi... 364 2e-98
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,... 360 3e-97
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ... 350 6e-94
>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
gi|449503560|ref|XP_004162063.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Cucumis sativus]
Length = 615
Score = 371 bits (952), Expect = e-100
Identities = 179/270 (66%), Positives = 217/270 (80%)
Frame = +3
Query: 3 AVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILK 182
A+V+NPIVDALGEAGRFKEA+GM+ERF VLE GPT+STYNSLVKG+CKA DL GASKILK
Sbjct: 337 AIVYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILK 396
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
MMIGRGF PTPTTYNYFFR+F+K+GKIEE+M+LY K+I SGY PD+LTYHLL+KMLCEEE
Sbjct: 397 MMIGRGFTPTPTTYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEE 456
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
RL L +Q+ EM+ RG D DLATSTM++HLLCK+H+ EEA EFE MIHRGIVPQYLT+
Sbjct: 457 RLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFC 516
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVL 722
+L ++ K G+T MA KL MSS+PHS +LP+TY + D R R+SI++KA+AMS++L
Sbjct: 517 RLHDEFMKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPDSIRARRTSIMRKAEAMSEML 576
Query: 723 KISKDPRVLSKMKXXXXXXXXXXXXLIDDI 812
K+ KDPR L K + LIDDI
Sbjct: 577 KVCKDPRELVKRRSPSEDAVFSANKLIDDI 606
Score = 60.5 bits (145), Expect = 9e-07
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 2/202 (0%)
Frame = +3
Query: 9 VFNPIVDALGEAGRFKEAMGMLERFSVLESG--PTVSTYNSLVKGFCKAKDLVGASKILK 182
+F ++D+L + G + A R + S P++ YN L+ G+ +++ L A ++
Sbjct: 232 LFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLWF 291
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
M +PT TY + + +E A+ L ++ G P+ + Y+ ++ L E
Sbjct: 292 EMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEAG 351
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
R + L + + ++T ++ CK L A + MI RG P TY
Sbjct: 352 RFKEALGMMERFMVLEQGPTISTYNSLVKGYCKAGDLSGASKILKMMIGRGFTPTPTTYN 411
Query: 543 KLTEDLKKSGMTVMAQKLSSQM 608
K G + L ++M
Sbjct: 412 YFFRFFSKYGKIEESMSLYNKM 433
>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial-like [Glycine max]
Length = 622
Score = 367 bits (941), Expect = 5e-99
Identities = 185/270 (68%), Positives = 215/270 (79%)
Frame = +3
Query: 3 AVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILK 182
A+V+NPI+DAL EAGRFKEA+GMLERF VLE GPT STYNSLVKGFCKA DLVGASKILK
Sbjct: 346 AIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGFCKAGDLVGASKILK 405
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
MMI RGF P+ TTYNYFFRYF++ KIEE MNLYTK+I SGY PDRLTYHLL+KMLCEEE
Sbjct: 406 MMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLCEEE 465
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
+L+L +Q+SKEMR G+D DLATSTM++HLLCK+ RLEEA VEFEDMI RGIVPQYLT++
Sbjct: 466 KLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQ 525
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVL 722
++ DLKK GMT MAQKL MSS+P+S LPNTY E R+ + R SII+KA+A SD+L
Sbjct: 526 RMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGEVREDAYARRKSIIRKAKAFSDML 585
Query: 723 KISKDPRVLSKMKXXXXXXXXXXXXLIDDI 812
K KDP L K + LI+DI
Sbjct: 586 KDCKDPSELRKHRSSSENTVSSTNSLIEDI 615
>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
mitochondrial [Vitis vinifera]
gi|296081989|emb|CBI20994.3| unnamed protein product
[Vitis vinifera]
Length = 597
Score = 364 bits (935), Expect = 2e-98
Identities = 178/269 (66%), Positives = 216/269 (80%)
Frame = +3
Query: 6 VVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILKM 185
+V+NPI+D+L EAGRFKEAMGM+ER V E+GPT+STYNSLVKGFCKA DLVGASK+LKM
Sbjct: 322 IVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKM 381
Query: 186 MIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEER 365
MI RGF PT TTYNYFFRYF++ GK EE MNLYTK+I SG+ PDRLTYHLLIKM+CEEER
Sbjct: 382 MISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLLIKMMCEEER 441
Query: 366 LELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKK 545
L+L +Q+SKEMR RG D DLATSTM++HLLCK+HRLEEA EFEDMI RGIVPQYLT+++
Sbjct: 442 LDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFER 501
Query: 546 LTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVLK 725
+ L+K G+T MA+KL M+S+PHS++LPNTY D SR ++SII++A+AMSD+LK
Sbjct: 502 MNNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDASRARKTSIIQRAEAMSDILK 561
Query: 726 ISKDPRVLSKMKXXXXXXXXXXXXLIDDI 812
DPR L K + LI+DI
Sbjct: 562 TCNDPRELVKRRSSFENTVLVADQLIEDI 590
Score = 79.7 bits (195), Expect = 2e-12
Identities = 53/200 (26%), Positives = 91/200 (45%)
Frame = +3
Query: 9 VFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILKMM 188
V+N +++ + + K A + PTV TY +LV+G+C+ + A +++ M
Sbjct: 253 VYNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEM 312
Query: 189 IGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEERL 368
G+G P YN A+ G+ +EAM + + + S P TY+ L+K C+ L
Sbjct: 313 RGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDL 372
Query: 369 ELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKKL 548
++ K M +RG D L T + + EE + MI G P LTY L
Sbjct: 373 VGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYHLL 432
Query: 549 TEDLKKSGMTVMAQKLSSQM 608
+ + + +A ++S +M
Sbjct: 433 IKMMCEEERLDLAVQVSKEM 452
Score = 64.3 bits (155), Expect = 7e-08
Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 2/208 (0%)
Frame = +3
Query: 9 VFNPIVDALGEAGRFKEAMGMLERFSVLESG--PTVSTYNSLVKGFCKAKDLVGASKILK 182
+F ++D+L + G + A ++ L+ P++ YN L+ G+ +++ L A ++ +
Sbjct: 216 LFKILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIRVYNVLLNGWFRSRKLKRAEQLWR 275
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
M PT TY + + + E+A+ L ++ G G P+ + Y+ +I L E
Sbjct: 276 TMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDSLAEAG 335
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
R + + + + ++T ++ CK L A + MI RG P TY
Sbjct: 336 RFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGDLVGASKVLKMMISRGFDPTLTTYN 395
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHS 626
+ G T L ++M H+
Sbjct: 396 YFFRYFSRCGKTEEGMNLYTKMIESGHT 423
>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 577
Score = 360 bits (925), Expect = 3e-97
Identities = 180/271 (66%), Positives = 215/271 (79%), Gaps = 1/271 (0%)
Frame = +3
Query: 3 AVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILK 182
A+V+NPI+DAL E GRFKE GM+E F ESGPT+STYNSLVKG+CKAKD VGASK+LK
Sbjct: 300 ALVYNPIIDALAEEGRFKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLK 359
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
MMI RGF PTPTTYNYFFR+F+KFG IEE MNLYTK+I SGY PDRLT+HLL+KMLCEEE
Sbjct: 360 MMISRGFVPTPTTYNYFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEE 419
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
RL+L +QISKEMR+RG D DLATSTM+IHL C++HR EEA +EFEDMI +GIVPQYLT++
Sbjct: 420 RLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQ 479
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYR-EGRDGSRQIRSSIIKKAQAMSDV 719
+L ++L+K GM A+KLS MSS+PHST LPNTY EG R RSSI++KA+AMS +
Sbjct: 480 RLNDELRKRGMVERARKLSDMMSSVPHSTNLPNTYSVEGDALRRARRSSILQKAEAMSKI 539
Query: 720 LKISKDPRVLSKMKXXXXXXXXXXXXLIDDI 812
LK DPR L K+K LI++I
Sbjct: 540 LKTCNDPRELVKLKSSSQNPITSAIQLIENI 570
Score = 60.1 bits (144), Expect = 1e-06
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 2/198 (1%)
Frame = +3
Query: 21 IVDALGEAGRFKEAMGMLERFSVLESG--PTVSTYNSLVKGFCKAKDLVGASKILKMMIG 194
++D+L + G + A + L+S P V YN ++ G+ +++ L A ++ M
Sbjct: 199 LLDSLCKEGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEMKK 258
Query: 195 RGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEERLEL 374
+P+ TY + + ++E A+ L + G P+ L Y+ +I L EE R +
Sbjct: 259 NNVSPSVVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGRFKE 318
Query: 375 VLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYKKLTE 554
V + + ++T ++ CK A + MI RG VP TY
Sbjct: 319 VSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLKMMISRGFVPTPTTYNYFFR 378
Query: 555 DLKKSGMTVMAQKLSSQM 608
K GM L ++M
Sbjct: 379 HFSKFGMIEEGMNLYTKM 396
>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477735|gb|AES58938.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 587
Score = 350 bits (897), Expect = 6e-94
Identities = 170/253 (67%), Positives = 210/253 (83%)
Frame = +3
Query: 3 AVVFNPIVDALGEAGRFKEAMGMLERFSVLESGPTVSTYNSLVKGFCKAKDLVGASKILK 182
A+V+NPI+DAL EAGRFKEA+GM+ERF VL+ GPT+STYNSLVKGFCKA D+ GASKILK
Sbjct: 324 AIVYNPIIDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILK 383
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
MI RGF P PTTYNYFFRYF++ GK++E MNLYTK+I SG+ PDRLTYHL++KMLCEEE
Sbjct: 384 KMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEE 443
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
+LEL +Q+S EMR +G+D DLATSTM+ HLLCK+H+LEEA EFEDMI RGI+PQYLT++
Sbjct: 444 KLELAVQVSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQ 503
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHSTRLPNTYREGRDGSRQIRSSIIKKAQAMSDVL 722
KL +LKK GM MA+KL MSS+P+S +LPNTY E RD + R SII+KA+A+S++L
Sbjct: 504 KLNVELKKQGMNEMARKLCHLMSSVPYSDKLPNTYGEVRDDAHARRKSIIQKAKAVSELL 563
Query: 723 KISKDPRVLSKMK 761
KDP+ L K +
Sbjct: 564 ---KDPKELDKFR 573
Score = 70.1 bits (170), Expect = 1e-09
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 2/208 (0%)
Frame = +3
Query: 9 VFNPIVDALGEAGRFKEAMGMLERFSVLESG--PTVSTYNSLVKGFCKAKDLVGASKILK 182
+F ++D+L + G +EA L R + G P++ YN ++ G+ +A+ L A ++ +
Sbjct: 219 LFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIRVYNIMLNGWFRARKLKHAERLWE 278
Query: 183 MMIGRGFAPTPTTYNYFFRYFAKFGKIEEAMNLYTKIIGSGYVPDRLTYHLLIKMLCEEE 362
M P+ TY + + ++E+A+ + ++ G P+ + Y+ +I L E
Sbjct: 279 EMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPIIDALAEAG 338
Query: 363 RLELVLQISKEMRTRGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIHRGIVPQYLTYK 542
R + L + + L+T ++ CK +E A + MI RG +P TY
Sbjct: 339 RFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGFLPIPTTYN 398
Query: 543 KLTEDLKKSGMTVMAQKLSSQMSSLPHS 626
+ G L ++M H+
Sbjct: 399 YFFRYFSRCGKVDEGMNLYTKMIESGHN 426