BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018523
         (945 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33876.3| unnamed protein product [Vitis vinifera]              237   3e-60
ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   237   3e-60
ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   224   2e-56
ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   224   2e-56
ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ri...   224   2e-56

>emb|CBI33876.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  237 bits (604), Expect = 3e-60
 Identities = 124/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
 Frame = -3

Query: 706 NRKKKLCIFNIPYSYSVTDIKTLLAECGTVKDVEILKQKDGRHKGFAFITMASADEAQTV 527
           N+K+KL + N+P+S SV DIK L  ECGTV DVEI+KQKDGR +G+AF+TM S +EAQ V
Sbjct: 56  NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAV 115

Query: 526 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXG--ETPHKLYVSNLAWKARATHLR 353
           +EKFDSYELSGRIIRVE AKR+                 ET HKLYVSNLAWK R+THLR
Sbjct: 116 VEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLR 175

Query: 352 EFFSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXAISSMDGKELMGRPIRLKFSE 173
           EFFSS FNPVS RVVFD+PSG S GYGF SF        AIS++DGKELMGRP+ LKFS 
Sbjct: 176 EFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFSV 235

Query: 172 RNVDGSSDLEAQITPDGQSKEAEDSKRNPEES 77
           + +D S D         + +E + S+  PEE+
Sbjct: 236 KTIDESGD---------EKEEGDISEGQPEEA 258


>ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
           vinifera]
          Length = 288

 Score =  237 bits (604), Expect = 3e-60
 Identities = 124/212 (58%), Positives = 148/212 (69%), Gaps = 2/212 (0%)
 Frame = -3

Query: 706 NRKKKLCIFNIPYSYSVTDIKTLLAECGTVKDVEILKQKDGRHKGFAFITMASADEAQTV 527
           N+K+KL + N+P+S SV DIK L  ECGTV DVEI+KQKDGR +G+AF+TM S +EAQ V
Sbjct: 86  NQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAV 145

Query: 526 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXG--ETPHKLYVSNLAWKARATHLR 353
           +EKFDSYELSGRIIRVE AKR+                 ET HKLYVSNLAWK R+THLR
Sbjct: 146 VEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLR 205

Query: 352 EFFSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXAISSMDGKELMGRPIRLKFSE 173
           EFFSS FNPVS RVVFD+PSG S GYGF SF        AIS++DGKELMGRP+ LKFS 
Sbjct: 206 EFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISALDGKELMGRPVHLKFSV 265

Query: 172 RNVDGSSDLEAQITPDGQSKEAEDSKRNPEES 77
           + +D S D         + +E + S+  PEE+
Sbjct: 266 KTIDESGD---------EKEEGDISEGQPEEA 288


>ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score =  224 bits (572), Expect = 2e-56
 Identities = 123/210 (58%), Positives = 152/210 (72%)
 Frame = -3

Query: 706 NRKKKLCIFNIPYSYSVTDIKTLLAECGTVKDVEILKQKDGRHKGFAFITMASADEAQTV 527
           N+K+KL IFN+P+S SV DIK L  +CGTV DVEI+KQK+GR +GFAF+TMAS DEAQ  
Sbjct: 91  NQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAA 150

Query: 526 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXGETPHKLYVSNLAWKARATHLREF 347
           I+KFDS E+SGR+I+VE AKR               GET +KLYVSNLAWK R+ +LR+F
Sbjct: 151 IQKFDSQEISGRVIKVEFAKR-LKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDF 209

Query: 346 FSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXAISSMDGKELMGRPIRLKFSERN 167
           FS  FNP++ARVVFD+P+G SAGYGFVSF        A+SS++GKELMGRP+RLKFSERN
Sbjct: 210 FSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERN 269

Query: 166 VDGSSDLEAQITPDGQSKEAEDSKRNPEES 77
           V+     EA+ TP     E++     PEES
Sbjct: 270 VN-----EAE-TPKEDIVESQ-----PEES 288


>ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
           sativus]
          Length = 282

 Score =  224 bits (572), Expect = 2e-56
 Identities = 123/210 (58%), Positives = 152/210 (72%)
 Frame = -3

Query: 706 NRKKKLCIFNIPYSYSVTDIKTLLAECGTVKDVEILKQKDGRHKGFAFITMASADEAQTV 527
           N+K+KL IFN+P+S SV DIK L  +CGTV DVEI+KQK+GR +GFAF+TMAS DEAQ  
Sbjct: 85  NQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAA 144

Query: 526 IEKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXGETPHKLYVSNLAWKARATHLREF 347
           I+KFDS E+SGR+I+VE AKR               GET +KLYVSNLAWK R+ +LR+F
Sbjct: 145 IQKFDSQEISGRVIKVEFAKR-LKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDF 203

Query: 346 FSSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXAISSMDGKELMGRPIRLKFSERN 167
           FS  FNP++ARVVFD+P+G SAGYGFVSF        A+SS++GKELMGRP+RLKFSERN
Sbjct: 204 FSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERN 263

Query: 166 VDGSSDLEAQITPDGQSKEAEDSKRNPEES 77
           V+     EA+ TP     E++     PEES
Sbjct: 264 VN-----EAE-TPKEDIVESQ-----PEES 282


>ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223532973|gb|EEF34739.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 278

 Score =  224 bits (571), Expect = 2e-56
 Identities = 115/199 (57%), Positives = 148/199 (74%), Gaps = 1/199 (0%)
 Frame = -3

Query: 703 RKKKLCIFNIPYSYSVTDIKTLLAECGTVKDVEILKQKDGRHKGFAFITMASADEAQTVI 524
           +K+KL +FN+P+S SV DIK L  +CGTV DVEI+KQK+GR +GFAF+T+AS +EAQ  I
Sbjct: 81  QKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAI 140

Query: 523 EKFDSYELSGRIIRVELAKRWXXXXXXXXXXXXXXGETPHKLYVSNLAWKARATHLREFF 344
           +K DS+E+SGRIIRVE AKR                ET HK+YVSNLAWK R+THLREFF
Sbjct: 141 DKLDSHEVSGRIIRVEFAKR-LKPPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFF 199

Query: 343 SSEFNPVSARVVFDTPSGGSAGYGFVSFXXXXXXXXAISSMDGKELMGRPIRLKFSERNV 164
           S+ F+PVS+RVVFD+P+G S+GYGFVSF        AIS++DGKELMGRP+RLKFS+R  
Sbjct: 200 STNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRLKFSDRKT 259

Query: 163 DGS-SDLEAQITPDGQSKE 110
           D S S+ + +   + QS++
Sbjct: 260 DESESENQEEENVEDQSEQ 278