BLASTX nr result
ID: Coptis24_contig00018509
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018509
(1923 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containi... 818 0.0
ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containi... 778 0.0
ref|XP_003595326.1| Pentatricopeptide repeat-containing protein ... 739 0.0
emb|CBI26320.3| unnamed protein product [Vitis vinifera] 652 0.0
ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 589 e-165
>ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like
[Vitis vinifera]
Length = 590
Score = 818 bits (2114), Expect = 0.0
Identities = 391/590 (66%), Positives = 477/590 (80%), Gaps = 1/590 (0%)
Frame = -1
Query: 1902 MKPHKPIFTHPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXX 1723
M+ P HPT+ LL+KCKTL +LKQ+HA MITT LI HTYP
Sbjct: 1 MRGPNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHAL 60
Query: 1722 TIFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCS 1543
+IFN I NP+IFLYNTLISS N HTHIAFSLYS++LTH +LKP FT+PSL KA S
Sbjct: 61 SIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGS 120
Query: 1542 HPWLYYGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNT 1363
PWL +G+ LHTH+LKFL P+ D FVQA+LLN+Y+KCG + RYLF+QI++PDLA+WN+
Sbjct: 121 QPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNS 180
Query: 1362 ILSAYAKSSTSN-EDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWA 1186
ILSAY +S + ED SLS+E L LF EMQ SL + NE TLVALI ACA LG +QG WA
Sbjct: 181 ILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWA 240
Query: 1185 HAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQS 1006
H Y+L++NL+LN FV TALI+ Y+KCGCL+LA Q+F++ +DTLCYNAMIGGFAIHG
Sbjct: 241 HVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYG 300
Query: 1005 RGALDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGC 826
ALD+F +M +G+ PDD+TL+V M +C+H GLV++G +F +MK+ YG+EPKLEHYGC
Sbjct: 301 HQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC 360
Query: 825 LVDLLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPET 646
LVDLLGRAG+L EA+E + +MPM+PNAV+WRSLLGA+RVHGNLE+G++ LK+LI+LEPET
Sbjct: 361 LVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPET 420
Query: 645 SGNYVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHS 466
SGNYVLLSNMYAS+N+WDDV++VR++MKD G+NK PGSS VE+GGA+HEF++GDKTHP S
Sbjct: 421 SGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRS 480
Query: 465 KEIYMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGP 286
KEIY+KLEEM+R+LH YGH EVLFDIEEEEKEDAL+YHSE+LAIAFALIAS+ P
Sbjct: 481 KEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAP 540
Query: 285 IRIIKNLRVCYDCHASTKLISKIYEREIIVRDRNRFHHFRDGKCSCLDYW 136
IRIIKNLRVC DCH S+KLISKIYEREIIVRDRNRFHHF++G CSC DYW
Sbjct: 541 IRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590
>ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like
[Glycine max]
Length = 591
Score = 778 bits (2010), Expect = 0.0
Identities = 373/586 (63%), Positives = 459/586 (78%), Gaps = 6/586 (1%)
Frame = -1
Query: 1875 HPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQISNP 1696
HP + LQKC L +LKQ+HA M+TT L TY TIFN I NP
Sbjct: 6 HPILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFTIFNHIPNP 65
Query: 1695 SIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHPWLYYGKP 1516
++FLYNTLISS T++ H+AFSLY+ ILTH +L+P FT+PSL KA SHPWL +G P
Sbjct: 66 TLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPP 125
Query: 1515 LHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTILSAYAKS- 1339
LH H+LKFL P YD FVQ SLLNFY+K G L VSRYLFDQI+EPDLATWNT+L+AYA+S
Sbjct: 126 LHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSA 185
Query: 1338 -----STSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAHAYI 1174
STS ED +S+E L LF +MQ+S +PNE TLVALI AC+NLG +QG WAH Y+
Sbjct: 186 SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYV 245
Query: 1173 LRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSRGAL 994
LRNNL+LNRFV TAL++ Y+KCGCLNLA Q+F+ +DT CYNAMIGGFA+HG AL
Sbjct: 246 LRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQAL 305
Query: 993 DVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCLVDL 814
+++ M+ + + PD T++V M+AC+H GLV++G IF +MK +G+EPKLEHYGCL+DL
Sbjct: 306 ELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDL 365
Query: 813 LGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETSGNY 634
LGRAG+L+EA+E ++DMPM+PNA++WRSLLGA+++HGNLE+G+ ALK+LIELEPETSGNY
Sbjct: 366 LGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNY 425
Query: 633 VLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSKEIY 454
VLLSNMYAS+ +W+DV++VR +MKD GV+K PG S VEI GA+HEF+ GDK HP SKEIY
Sbjct: 426 VLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIY 485
Query: 453 MKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPIRII 274
K+ E+NR+L YGH EVLFD+EEE+KED L+YHSE+LAIAFALIAS+SS PIRII
Sbjct: 486 SKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSSSMPIRII 545
Query: 273 KNLRVCYDCHASTKLISKIYEREIIVRDRNRFHHFRDGKCSCLDYW 136
KNLRVC DCHA TKLIS Y+R+IIVRDRNRFHHF+DG CSCLDYW
Sbjct: 546 KNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591
>ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 740
Score = 739 bits (1909), Expect = 0.0
Identities = 364/601 (60%), Positives = 455/601 (75%), Gaps = 12/601 (1%)
Frame = -1
Query: 1902 MKPHKPIFTHPTILLLQ-KCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXX 1726
MKP IF HPT+ LQ KC +LKQIH +ITT L TY
Sbjct: 140 MKPKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSKFNLPYA 199
Query: 1725 XTIFNQISNPSIFLYNTLISSFTN--NPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKA 1552
IFN ISNP+IFLYNTLISS N N + H+AFSLY++ILT+ +L+P FT+PSL KA
Sbjct: 200 FKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKA 259
Query: 1551 SCSHP-WLYYGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLA 1375
CS+ W +YG LHTH+LKFL P +D+FVQASLLNFY+K G + VSRY+FD+I EPDLA
Sbjct: 260 CCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLA 319
Query: 1374 TWNTILSAYAKSST------SNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANL 1213
TWN IL+AYA+SS+ S +D S+E+L+LF +MQV RPNE T+VALI AC+NL
Sbjct: 320 TWNVILNAYARSSSYHSYSNSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNL 379
Query: 1212 GVFNQGTWAHAYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVR--KDTLCYNA 1039
G +QG W H ++LRN +++NRFV TA ++ Y+KCGCLNLA QVF++ +D+ CY A
Sbjct: 380 GAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTA 439
Query: 1038 MIGGFAIHGQSRGALDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEY 859
MIGGFA+HG AL+++ +M+ G+ PD T +V M+AC+H GLV++G IF +MK+ +
Sbjct: 440 MIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVH 499
Query: 858 GIEPKLEHYGCLVDLLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLA 679
G+EPKLEHYGCL+DLLGRAG+L+EA+E + DMPM+PNAV+WRSLLGA+R+HGNL +G++A
Sbjct: 500 GVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVA 559
Query: 678 LKNLIELEPETSGNYVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHE 499
L LIELEPETSGNYVLLSNMYASV + +DV++VR++MK GVNK PG S VEI GA+HE
Sbjct: 560 LTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHE 619
Query: 498 FILGDKTHPHSKEIYMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIA 319
F+ GD++HP SKEIY+K+ E+N +L YGH A E LFD+EEE+KE L+YHSE+LAIA
Sbjct: 620 FLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIA 679
Query: 318 FALIASNSSGPIRIIKNLRVCYDCHASTKLISKIYEREIIVRDRNRFHHFRDGKCSCLDY 139
FALIAS SS IRIIKNLRVC DCHA TKLIS Y REIIVRDRNRFHHF+DG CSCLDY
Sbjct: 680 FALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDY 739
Query: 138 W 136
W
Sbjct: 740 W 740
>emb|CBI26320.3| unnamed protein product [Vitis vinifera]
Length = 522
Score = 652 bits (1683), Expect = 0.0
Identities = 333/589 (56%), Positives = 405/589 (68%)
Frame = -1
Query: 1902 MKPHKPIFTHPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXX 1723
M+ P HPT+ LL+KCKTL +LKQ+HA MITT LI HTYP
Sbjct: 1 MRGPNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHAL 60
Query: 1722 TIFNQISNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCS 1543
+IFN I NP+IFLYNTLISS N +KP
Sbjct: 61 SIFNHIPNPTIFLYNTLISSLAN--------------------IKP-------------- 86
Query: 1542 HPWLYYGKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNT 1363
HTHI L SR L +P+ T+ +
Sbjct: 87 ----------HTHIAFSLY-----------------------SRVLTHTTLKPNGFTFPS 113
Query: 1362 ILSAYAKSSTSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAH 1183
+ A D L L LF EMQ SL + NE TLVALI ACA LG +QG WAH
Sbjct: 114 LFKACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAH 173
Query: 1182 AYILRNNLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSR 1003
Y+L++NL+LN FV TALI+ Y+KCGCL+LA Q+F++ +DTLCYNAMIGGFAIHG
Sbjct: 174 VYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 233
Query: 1002 GALDVFDRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCL 823
ALD+F +M +G+ PDD+TL+V M +C+H GLV++G +F +MK+ YG+EPKLEHYGCL
Sbjct: 234 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 293
Query: 822 VDLLGRAGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETS 643
VDLLGRAG+L EA+E + +MPM+PNAV+WRSLLGA+RVHGNLE+G++ LK+LI+LEPETS
Sbjct: 294 VDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 353
Query: 642 GNYVLLSNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSK 463
GNYVLLSNMYAS+N+WDDV++VR++MKD G+NK PGSS VE+GGA+HEF++GDKTHP SK
Sbjct: 354 GNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSK 413
Query: 462 EIYMKLEEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPI 283
EIY+KLEEM+R+LH YGH EVLFDIEEEEKEDAL+YHSE+LAIAFALIAS+ PI
Sbjct: 414 EIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPI 473
Query: 282 RIIKNLRVCYDCHASTKLISKIYEREIIVRDRNRFHHFRDGKCSCLDYW 136
RIIKNLRVC DCH S+KLISKIYEREIIVRDRNRFHHF++G CSC DYW
Sbjct: 474 RIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522
>ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g43790-like [Glycine max]
Length = 516
Score = 589 bits (1518), Expect = e-165
Identities = 298/541 (55%), Positives = 379/541 (70%)
Frame = -1
Query: 1884 IFTHPTILLLQKCKTLTSLKQIHATMITTTLIHHTYPXXXXXXXXXXXXXXXXXTIFNQI 1705
+ HP + LQKC L +LKQ+HA M+TT L TY TIFN I
Sbjct: 1 MLNHPILQKLQKCHNLNTLKQVHAQMLTTGLSLQTYFLSHLLNTSSKFASTYALTIFNHI 60
Query: 1704 SNPSIFLYNTLISSFTNNPHHTHIAFSLYSQILTHNSLKPTCFTYPSLLKASCSHPWLYY 1525
+P++FLYNTLISS T++ H+A SLY+ ILTHN+L+P FT+PSL KA SHPWL +
Sbjct: 61 PSPTLFLYNTLISSLTHHSDQIHLALSLYNHILTHNTLQPNSFTFPSLFKACASHPWLQH 120
Query: 1524 GKPLHTHILKFLVPSYDHFVQASLLNFYSKCGMLDVSRYLFDQITEPDLATWNTILSAYA 1345
G PLH H+LKFL P YD FVQ SLLNFY+K G L VSRYLF+QI+EPDLATWNT+L
Sbjct: 121 GPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLXVSRYLFNQISEPDLATWNTML---- 176
Query: 1344 KSSTSNEDNSLSIETLFLFNEMQVSLTRPNEKTLVALIGACANLGVFNQGTWAHAYILRN 1165
+S +PNE T VALI AC+NLG +QG
Sbjct: 177 -----------------------LSQIKPNEVTPVALISACSNLGALSQG---------- 203
Query: 1164 NLELNRFVATALIEFYAKCGCLNLAKQVFERAVRKDTLCYNAMIGGFAIHGQSRGALDVF 985
+ Y+KCG LNLA Q+F+ +DT CYNAMIGGFA+HG AL+++
Sbjct: 204 -------------DMYSKCGYLNLACQLFDVLSDRDTFCYNAMIGGFAVHGHGNQALEMY 250
Query: 984 DRMRCDGVRPDDITLLVVMYACAHAGLVKDGRRIFNTMKDEYGIEPKLEHYGCLVDLLGR 805
+M+ +G+ PD T++V M+AC+H GLV++G IF +MK +G+EPKLEHY CL+DLLGR
Sbjct: 251 RKMKLEGLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGIHGMEPKLEHYRCLIDLLGR 310
Query: 804 AGKLEEAKEAIRDMPMEPNAVVWRSLLGASRVHGNLELGQLALKNLIELEPETSGNYVLL 625
AG+L++A+E + DMPM+PNA++WRSLLGA+++HGNLE+G+ ALK+LIELEPET GNYVLL
Sbjct: 311 AGRLKDAEERLHDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETRGNYVLL 370
Query: 624 SNMYASVNKWDDVEKVREVMKDQGVNKAPGSSFVEIGGAIHEFILGDKTHPHSKEIYMKL 445
SNMYAS+ +W+DV++VR +MKD+GV+K PG S VEI GA+HEF+ GDK HP SKEI++K+
Sbjct: 371 SNMYASIARWNDVKRVRMLMKDRGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIHLKI 430
Query: 444 EEMNRKLHTYGHNASIKEVLFDIEEEEKEDALTYHSEKLAIAFALIASNSSGPIRIIKNL 265
E+NR+L YGH EVLFD+ EE+KED L+YHSE+LAIAFALIAS SS PIRIIKNL
Sbjct: 431 GEINRRLQEYGHKPRTSEVLFDV-EEDKEDFLSYHSERLAIAFALIASPSSMPIRIIKNL 489
Query: 264 R 262
R
Sbjct: 490 R 490