BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018506
         (497 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   236   1e-60
ref|XP_002515531.1| pentatricopeptide repeat-containing protein,...   234   7e-60
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   225   3e-57
ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|2...   222   2e-56
ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ...   217   9e-55

>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  236 bits (602), Expect = 1e-60
 Identities = 116/165 (70%), Positives = 132/165 (80%)
 Frame = +2

Query: 2   MLRNTILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVG 181
           ML   I PNK+ FPF+LKA AGL DL LGK +HGS VK+GFD D++VQNTMVHMY  C G
Sbjct: 100 MLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSG 159

Query: 182 GIEFARNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVSVLS 361
           G+EFAR LFD M     V+W+AMIGGYARLG S+ AVGLFR+MQIAGV  D++TMVSVLS
Sbjct: 160 GMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLS 219

Query: 362 ACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKCGDVDE 496
           AC DLGALELGKW+  YIEKE V K  EL NAL+DMFAKCGDVD+
Sbjct: 220 ACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDK 264


>ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545475|gb|EEF46980.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  234 bits (596), Expect = 7e-60
 Identities = 119/166 (71%), Positives = 132/166 (79%), Gaps = 1/166 (0%)
 Frame = +2

Query: 2   MLRNTILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVG 181
           ML   +LPNKFT+PF+LKA AG+  L LGK +HGS +K+GFD D++VQNTMVHMY     
Sbjct: 127 MLEYDVLPNKFTYPFVLKACAGIGYLNLGKSVHGSVLKFGFDNDVHVQNTMVHMYCCGRD 186

Query: 182 GIEFARNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGV-RADEITMVSVL 358
           GIEFAR +FD M     VSWSAMIGGYARLG  SDA+ LFREMQI GV R DEITMVSVL
Sbjct: 187 GIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVL 246

Query: 359 SACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKCGDVDE 496
           SAC DLGALELGKWV  YIEKE V K+ ELCNALIDMFAKCGDVD+
Sbjct: 247 SACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDK 292


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  225 bits (574), Expect = 3e-57
 Identities = 109/165 (66%), Positives = 131/165 (79%)
 Frame = +2

Query: 2   MLRNTILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVG 181
           ML + ILPNKFT+PF+LKA AGL  L LG+ +HGS VK+GFD D++VQNTMVHMYS C G
Sbjct: 123 MLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAG 182

Query: 182 GIEFARNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVSVLS 361
           GI  AR +FD M  +  V+WSAMIGGYAR+G S++AV LFREMQ+A V  DEITMVS+LS
Sbjct: 183 GINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLS 242

Query: 362 ACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKCGDVDE 496
           AC DLGALELGKW+  YIE+  + K  E+ NALIDMFAKCGD+ +
Sbjct: 243 ACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISK 287


>ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score =  222 bits (566), Expect = 2e-56
 Identities = 113/168 (67%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
 Frame = +2

Query: 2   MLRNTILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSC-- 175
           ML    LPNKFT+PF+LKA AG+ +L LGK +HGS +K+GF  ++ VQNT+VHMY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 176 -VGGIEFARNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVS 352
             GGIEFAR +FD M  +  VSWSAMIGGY R+G SSDA+ LFREMQI GV  DEITMVS
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 353 VLSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKCGDVDE 496
           VLSAC  LGALELGKWV  Y+EKE V K  EL NALIDMFAKCGDVD+
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDK 168



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
 Frame = +2

Query: 17  ILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVGGIEFA 196
           + P++ T   +L A  GL  L+LGK +     K     ++ + N ++ M++ C G ++ A
Sbjct: 111 VCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKC-GDVDKA 169

Query: 197 RNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVSVLSACADL 376
            NLF  M   ++VSW+++IGG A  G   +AV +F EM  +GV  D++  + +LSAC+  
Sbjct: 170 TNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHS 229

Query: 377 GALELGKWVNFYIEKEG--VPKAGELCNALIDMFAKCGDVDE 496
           G ++ GK     + K+   VPK  E    ++DM  + G V E
Sbjct: 230 GLVDKGKRYFDSMRKDFSIVPKI-EHYGCMVDMLCRAGLVKE 270


>ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477801|gb|AES59004.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  217 bits (552), Expect = 9e-55
 Identities = 107/167 (64%), Positives = 129/167 (77%), Gaps = 2/167 (1%)
 Frame = +2

Query: 2   MLRNTILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVG 181
           MLR  + PNKFTFPF+LK  AG+  L+LGK +HG  VK+GF+ D++V NT++HMY  C+G
Sbjct: 116 MLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYC-CLG 174

Query: 182 --GIEFARNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVSV 355
             G EFA  +FD       V+WSAMI G+ RLG SS AV LFREMQ+ GV  DEITMVSV
Sbjct: 175 EDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSV 234

Query: 356 LSACADLGALELGKWVNFYIEKEGVPKAGELCNALIDMFAKCGDVDE 496
           LSACADLGALELGKWV  Y+EK+ +PK+ ELCNALIDMFAKCG+VD+
Sbjct: 235 LSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDK 281



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
 Frame = +2

Query: 17  ILPNKFTFPFLLKASAGLLDLKLGKQIHGSAVKYGFDTDLYVQNTMVHMYSSCVGGIEFA 196
           + P++ T   +L A A L  L+LGK +     K      + + N ++ M++ C G ++ A
Sbjct: 224 VCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKC-GNVDKA 282

Query: 197 RNLFDGMTNTSVVSWSAMIGGYARLGMSSDAVGLFREMQIAGVRADEITMVSVLSACADL 376
             LF  M + ++VSW+++I G A  G   DAV LF EM   G+  D++  + VLSAC+  
Sbjct: 283 IKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHS 342

Query: 377 GALELGKWVNFYIEKEG--VPKAGELCNALIDMFAKCGDVDE 496
           G ++ G++    +E+    VPK  E    ++D+  + G V E
Sbjct: 343 GLVDKGRYYFGSMERNFSIVPKV-EHYGCMVDLLCRGGFVKE 383