BLASTX nr result

ID: Coptis24_contig00017999 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017999
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515003.1| multidrug resistance-associated protein 2, 6...    63   3e-08
ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3...    60   2e-07
ref|XP_003567367.1| PREDICTED: ABC transporter C family member 3...    58   7e-07
ref|XP_004169512.1| PREDICTED: LOW QUALITY PROTEIN: ABC transpor...    58   9e-07
ref|XP_004135511.1| PREDICTED: ABC transporter C family member 3...    58   9e-07

>ref|XP_002515003.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
            gi|223546054|gb|EEF47557.1| multidrug
            resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
          Length = 1464

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +3

Query: 3    SIETAQRLFLGMINSVFRAPVLFFDSTPSSQILNRVS 113
            ++ETAQRLFLGMI S+FRAP+ FFDSTPSS+ILNR S
Sbjct: 964  AVETAQRLFLGMIKSIFRAPISFFDSTPSSRILNRSS 1000


>ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 1454

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +3

Query: 3    SIETAQRLFLGMINSVFRAPVLFFDSTPSSQILNRVS 113
            ++ETAQRLFLGMI SVFRAPV FFD+TPSS+I++R S
Sbjct: 953  AVETAQRLFLGMITSVFRAPVSFFDTTPSSRIMSRSS 989


>ref|XP_003567367.1| PREDICTED: ABC transporter C family member 3-like [Brachypodium
            distachyon]
          Length = 1502

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +3

Query: 3    SIETAQRLFLGMINSVFRAPVLFFDSTPSSQILNRVS 113
            +IETAQ+LFL MI ++FRAP+ FFDSTPSS+ILNR S
Sbjct: 1000 AIETAQQLFLAMITNIFRAPMSFFDSTPSSRILNRAS 1036


>ref|XP_004169512.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter C family member
            3-like [Cucumis sativus]
          Length = 1444

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 3    SIETAQRLFLGMINSVFRAPVLFFDSTPSSQILNRVS 113
            +IETAQR+FLGM+ S+F AP+ FFD+ PSSQILNR S
Sbjct: 932  AIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSS 968


>ref|XP_004135511.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus]
          Length = 1444

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 3    SIETAQRLFLGMINSVFRAPVLFFDSTPSSQILNRVS 113
            +IETAQR+FLGM+ S+F AP+ FFD+ PSSQILNR S
Sbjct: 932  AIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSS 968


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