BLASTX nr result

ID: Coptis24_contig00017943 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017943
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75409.1| hypothetical protein VITISV_018961 [Vitis vinifera]    51   7e-06
emb|CAN60916.1| hypothetical protein VITISV_014386 [Vitis vinifera]    52   9e-06

>emb|CAN75409.1| hypothetical protein VITISV_018961 [Vitis vinifera]
          Length = 445

 Score = 51.2 bits (121), Expect(2) = 7e-06
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = +3

Query: 369 LGFRHIRDINSSLLSKWI*LFGNEECGLWKDVIRDKYRLDGMGGFTKKVSSTYG 530
           LG R +  +N +LL KWI  F  E+  LWK V+  KY  +G G  TKKV+ T+G
Sbjct: 229 LGLRKLVPLNKALLGKWIWRFACEKENLWKQVLLAKYGQEGFGWRTKKVNETFG 282



 Score = 23.5 bits (49), Expect(2) = 7e-06
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 320 DFLWGTINDAKRYHSIAW 373
           DFLWG  N  ++ H + W
Sbjct: 200 DFLWGGGNLERKVHLVNW 217


>emb|CAN60916.1| hypothetical protein VITISV_014386 [Vitis vinifera]
          Length = 257

 Score = 52.0 bits (123), Expect(2) = 9e-06
 Identities = 26/54 (48%), Positives = 32/54 (59%)
 Frame = +3

Query: 369 LGFRHIRDINSSLLSKWI*LFGNEECGLWKDVIRDKYRLDGMGGFTKKVSSTYG 530
           LG R I  +N +LL KWI +F  E+  LWK VI  KY  +G G  TKK   T+G
Sbjct: 170 LGIRKIDPLNKALLGKWIWIFAYEKDNLWKRVIGVKYGQEGFGWRTKKARETFG 223



 Score = 22.3 bits (46), Expect(2) = 9e-06
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 320 DFLWGTINDAKRYHSIAW 373
           DFLWG  +  ++ H I W
Sbjct: 141 DFLWGGGSFERKVHLINW 158


Top