BLASTX nr result
ID: Coptis24_contig00017941
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00017941
(707 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putativ... 200 7e-63
ref|XP_002315792.1| predicted protein [Populus trichocarpa] gi|2... 199 5e-62
emb|CBI26203.3| unnamed protein product [Vitis vinifera] 188 1e-60
ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 188 1e-60
ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabido... 190 1e-59
>ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 476
Score = 200 bits (508), Expect(2) = 7e-63
Identities = 99/125 (79%), Positives = 112/125 (89%)
Frame = -2
Query: 706 VCDKNKRLQTLLSLLEADEPKSGIIFVGEQSEKSKKAGNDPSTTLVINFLITSYNKSSEI 527
+C KN+R Q LLSLL+ D PKSGI+FVGEQSEKSKKAG+ P TTL+++FL TSY+ S+I
Sbjct: 313 ICSKNQRHQILLSLLQCDAPKSGIVFVGEQSEKSKKAGHAPPTTLLVDFLETSYSDCSDI 372
Query: 526 LLLEEDMNFNSRATSLSEVRQGGGCLLVATDIAARGVDLPETTHIYNFDLPRSAVDYLHR 347
LLLEEDMNFN RA SLSEV+QGGG LLVATDIAARGVDLPETTHIYNF+LPR+AVDYLHR
Sbjct: 373 LLLEEDMNFNLRAASLSEVKQGGGYLLVATDIAARGVDLPETTHIYNFELPRTAVDYLHR 432
Query: 346 AGRTG 332
AGRTG
Sbjct: 433 AGRTG 437
Score = 67.0 bits (162), Expect(2) = 7e-63
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -1
Query: 230 RKPFSDEKCTVTNMITAEERFALQRFENELMFQCEEL 120
RKPFSDEKC TN+IT EERF LQR+ENELMF CEEL
Sbjct: 438 RKPFSDEKCYATNIITPEERFVLQRYENELMFNCEEL 474
>ref|XP_002315792.1| predicted protein [Populus trichocarpa] gi|222864832|gb|EEF01963.1|
predicted protein [Populus trichocarpa]
Length = 310
Score = 199 bits (506), Expect(2) = 5e-62
Identities = 101/125 (80%), Positives = 110/125 (88%)
Frame = -2
Query: 706 VCDKNKRLQTLLSLLEADEPKSGIIFVGEQSEKSKKAGNDPSTTLVINFLITSYNKSSEI 527
+C K +R QTLLSLL++D PKSGIIFVGEQSEKSKKAGN P T +++FL TSY SEI
Sbjct: 147 ICSKKQRHQTLLSLLQSDAPKSGIIFVGEQSEKSKKAGNGPPTIDLVDFLKTSYGDCSEI 206
Query: 526 LLLEEDMNFNSRATSLSEVRQGGGCLLVATDIAARGVDLPETTHIYNFDLPRSAVDYLHR 347
LLLEEDMNFNSRA SLSEVRQGGG LLVATDIAARGVDLPE THIYNF+LPR+AVDYLHR
Sbjct: 207 LLLEEDMNFNSRAASLSEVRQGGGYLLVATDIAARGVDLPEITHIYNFNLPRTAVDYLHR 266
Query: 346 AGRTG 332
AGRTG
Sbjct: 267 AGRTG 271
Score = 65.1 bits (157), Expect(2) = 5e-62
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = -1
Query: 230 RKPFSDEKCTVTNMITAEERFALQRFENELMFQCEEL 120
RKPFSDEKC VT++I EERF LQR+ENELMF CEEL
Sbjct: 272 RKPFSDEKCNVTSIIMPEERFVLQRYENELMFNCEEL 308
>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
Length = 486
Score = 188 bits (478), Expect(2) = 1e-60
Identities = 95/123 (77%), Positives = 106/123 (86%)
Frame = -2
Query: 706 VCDKNKRLQTLLSLLEADEPKSGIIFVGEQSEKSKKAGNDPSTTLVINFLITSYNKSSEI 527
+C+K +R QTLLSLL +D P+ GIIFVGEQSEKSKKAGN PS TL+I+FL TSY +I
Sbjct: 319 ICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDI 378
Query: 526 LLLEEDMNFNSRATSLSEVRQGGGCLLVATDIAARGVDLPETTHIYNFDLPRSAVDYLHR 347
LLLEEDMNFN RA SLSEVRQ GG LL++TDIAARGVDLPETTHIYNFDLPR+ VDYLHR
Sbjct: 379 LLLEEDMNFNLRAASLSEVRQRGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHR 438
Query: 346 AGR 338
AGR
Sbjct: 439 AGR 441
Score = 71.2 bits (173), Expect(2) = 1e-60
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -1
Query: 230 RKPFSDEKCTVTNMITAEERFALQRFENELMFQCEELSITS*C 102
RKPFSD+KC VTN+IT+EERF LQR+ENELMF CEEL +++ C
Sbjct: 444 RKPFSDQKCCVTNIITSEERFVLQRYENELMFHCEELFLSTQC 486
>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Vitis vinifera]
Length = 482
Score = 188 bits (478), Expect(2) = 1e-60
Identities = 95/123 (77%), Positives = 106/123 (86%)
Frame = -2
Query: 706 VCDKNKRLQTLLSLLEADEPKSGIIFVGEQSEKSKKAGNDPSTTLVINFLITSYNKSSEI 527
+C+K +R QTLLSLL +D P+ GIIFVGEQSEKSKKAGN PS TL+I+FL TSY +I
Sbjct: 315 ICNKYERRQTLLSLLHSDAPECGIIFVGEQSEKSKKAGNAPSATLLIDFLKTSYGGCPDI 374
Query: 526 LLLEEDMNFNSRATSLSEVRQGGGCLLVATDIAARGVDLPETTHIYNFDLPRSAVDYLHR 347
LLLEEDMNFN RA SLSEVRQ GG LL++TDIAARGVDLPETTHIYNFDLPR+ VDYLHR
Sbjct: 375 LLLEEDMNFNLRAASLSEVRQRGGYLLISTDIAARGVDLPETTHIYNFDLPRTVVDYLHR 434
Query: 346 AGR 338
AGR
Sbjct: 435 AGR 437
Score = 71.2 bits (173), Expect(2) = 1e-60
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -1
Query: 230 RKPFSDEKCTVTNMITAEERFALQRFENELMFQCEELSITS*C 102
RKPFSD+KC VTN+IT+EERF LQR+ENELMF CEEL +++ C
Sbjct: 440 RKPFSDQKCCVTNIITSEERFVLQRYENELMFHCEELFLSTQC 482
>ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
gi|108861900|sp|Q3E9C3.1|RH58_ARATH RecName:
Full=DEAD-box ATP-dependent RNA helicase 58,
chloroplastic; Flags: Precursor
gi|332005287|gb|AED92670.1| DEAD-box ATP-dependent RNA
helicase 58 [Arabidopsis thaliana]
Length = 472
Score = 190 bits (483), Expect(2) = 1e-59
Identities = 93/125 (74%), Positives = 108/125 (86%)
Frame = -2
Query: 706 VCDKNKRLQTLLSLLEADEPKSGIIFVGEQSEKSKKAGNDPSTTLVINFLITSYNKSSEI 527
+C+K + Q LL+LLE+D P+S IIFVGEQSEKSKKAGNDPSTTL++ FL TSY S EI
Sbjct: 309 MCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEI 368
Query: 526 LLLEEDMNFNSRATSLSEVRQGGGCLLVATDIAARGVDLPETTHIYNFDLPRSAVDYLHR 347
LLLE DMNFNSRA SL+E+RQGGG LLV+TDIAARG+DLPETTHI+NFDLP++ DYLHR
Sbjct: 369 LLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 428
Query: 346 AGRTG 332
AGR G
Sbjct: 429 AGRAG 433
Score = 65.9 bits (159), Expect(2) = 1e-59
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = -1
Query: 230 RKPFSDEKCTVTNMITAEERFALQRFENELMFQCEELSI 114
RKPFSD KC V N+IT+EERF LQR+ENELMF CEE+ +
Sbjct: 434 RKPFSDRKCIVANLITSEERFVLQRYENELMFSCEEMML 472