BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017933
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
emb|CBI24939.3| unnamed protein product [Vitis vinifera]              136   2e-30
ref|NP_190885.5| tetratricopeptide repeat domain-containing prot...   133   2e-29
sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-c...   133   2e-29
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,...   131   5e-29

>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/94 (70%), Positives = 77/94 (81%)
 Frame = +1

Query: 1   AITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKP 180
           AI  N++ESALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP  ASLL+E M++EGL+P
Sbjct: 102 AIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRP 161

Query: 181 FVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDC 282
            +DVYT+LVS YG SG   +AF  VEDMKSV+DC
Sbjct: 162 TLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDC 195


>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  136 bits (343), Expect = 2e-30
 Identities = 66/94 (70%), Positives = 77/94 (81%)
 Frame = +1

Query: 1   AITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKP 180
           AI  N++ESALKIF LLRKQ WY PRCQTYTKL +MLGKCKQP  ASLL+E M++EGL+P
Sbjct: 102 AIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRP 161

Query: 181 FVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDC 282
            +DVYT+LVS YG SG   +AF  VEDMKSV+DC
Sbjct: 162 TLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDC 195


>ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana] gi|332645523|gb|AEE79044.1| tetratricopeptide
           repeat domain-containing protein [Arabidopsis thaliana]
          Length = 499

 Score =  133 bits (334), Expect = 2e-29
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = +1

Query: 1   AITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKP 180
           AI  N+W+SALKIF LLRKQ WY PRC+TYTKLF +LG CKQP  ASLL+E M++EGLKP
Sbjct: 118 AIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKP 177

Query: 181 FVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDC 282
            +DVYTSL+SVYG S    +AF  +E MKSV+DC
Sbjct: 178 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDC 211


>sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
           gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia
           ligase-like protein [Arabidopsis thaliana]
          Length = 447

 Score =  133 bits (334), Expect = 2e-29
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = +1

Query: 1   AITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKP 180
           AI  N+W+SALKIF LLRKQ WY PRC+TYTKLF +LG CKQP  ASLL+E M++EGLKP
Sbjct: 68  AIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKP 127

Query: 181 FVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDC 282
            +DVYTSL+SVYG S    +AF  +E MKSV+DC
Sbjct: 128 TIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDC 161


>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  131 bits (330), Expect = 5e-29
 Identities = 62/94 (65%), Positives = 74/94 (78%)
 Frame = +1

Query: 1   AITNNQWESALKIFELLRKQDWYVPRCQTYTKLFVMLGKCKQPGYASLLYEKMVAEGLKP 180
           AI   +W+SALKIFELLRKQ WY PRCQTYTKL +MLGKC+QP  A LL+E M  EGL+P
Sbjct: 102 AIKERRWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRP 161

Query: 181 FVDVYTSLVSVYGLSGHFQEAFGIVEDMKSVTDC 282
            +DVYT+LVS YG SG   +AF  V++MKSV+DC
Sbjct: 162 TIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDC 195