BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017905
         (628 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-...   100   2e-19
ref|XP_002333974.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-19
emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera]   100   2e-19
ref|XP_002320307.1| predicted protein [Populus trichocarpa] gi|2...   100   3e-19
gb|AAT67045.1| DNA mismatch repair protein [Petunia x hybrida]        100   3e-19

>ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera]
          Length = 1297

 Score =  100 bits (249), Expect = 2e-19
 Identities = 57/122 (46%), Positives = 71/122 (58%), Gaps = 17/122 (13%)
 Frame = +2

Query: 230 QPKKKKPLLVISPISNLK--------KMYGEEVVGKRVKVYWPLDKNWYEGIVKNFDDLS 385
           Q K +KPLLVI P             K YGEEVV +RVKVYWPLDK+WY G VK+FD+L+
Sbjct: 64  QAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKSWYVGCVKSFDELT 123

Query: 386 GKHLVQYDDAEEELLDFQDXXXXXXXXXXXXXSFRRLKRSN---------GESEVKEKDD 538
           G+HLVQYDDA+EE LD                S RRL+R +         GE+ V+E+  
Sbjct: 124 GEHLVQYDDADEETLDL--GKEKIEWVEDKGRSLRRLRRGSVFEKGVVPVGEANVEEESG 181

Query: 539 GN 544
           G+
Sbjct: 182 GD 183


>ref|XP_002333974.1| predicted protein [Populus trichocarpa] gi|222839403|gb|EEE77740.1|
           predicted protein [Populus trichocarpa]
          Length = 805

 Score =  100 bits (249), Expect = 2e-19
 Identities = 59/144 (40%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
 Frame = +2

Query: 230 QPKKKKPLLVI----SPISNLKKMYGEEVVGKRVKVYWPLDKNWYEGIVKNFDDLSGKHL 397
           Q K KKPLLVI    SP  +   +YG+E V +RV+VYWPLDK+WYEG+VK++DD S KHL
Sbjct: 73  QSKPKKPLLVIGQTPSPSPSKVGVYGKEAVERRVRVYWPLDKSWYEGLVKSYDDESKKHL 132

Query: 398 VQYDDAEEELLDF--------QDXXXXXXXXXXXXXSFRRLKRSNGESEVKEKDDGNVVX 553
           +QYDD+EEELLD         +               FR++   + E E  E D+G    
Sbjct: 133 IQYDDSEEELLDLNNEKIEWVEPCVKKFKRLRRGSLGFRKIVLEDDEMENVEADNGGA-- 190

Query: 554 XXXXXXXXXXXXXXXXWGKNAKND 625
                           WGKNA+ D
Sbjct: 191 ---GGGSGGDDSSDEDWGKNAEKD 211


>emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera]
          Length = 1349

 Score =  100 bits (249), Expect = 2e-19
 Identities = 57/122 (46%), Positives = 71/122 (58%), Gaps = 17/122 (13%)
 Frame = +2

Query: 230 QPKKKKPLLVISPISNLK--------KMYGEEVVGKRVKVYWPLDKNWYEGIVKNFDDLS 385
           Q K +KPLLVI P             K YGEEVV +RVKVYWPLDK+WY G VK+FD+L+
Sbjct: 72  QAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKSWYVGCVKSFDELT 131

Query: 386 GKHLVQYDDAEEELLDFQDXXXXXXXXXXXXXSFRRLKRSN---------GESEVKEKDD 538
           G+HLVQYDDA+EE LD                S RRL+R +         GE+ V+E+  
Sbjct: 132 GEHLVQYDDADEETLDL--GKEKIEWVEDKGRSLRRLRRGSVFEKGVVPVGEANVEEESG 189

Query: 539 GN 544
           G+
Sbjct: 190 GD 191


>ref|XP_002320307.1| predicted protein [Populus trichocarpa] gi|222861080|gb|EEE98622.1|
           predicted protein [Populus trichocarpa]
          Length = 1288

 Score =  100 bits (248), Expect = 3e-19
 Identities = 59/144 (40%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
 Frame = +2

Query: 230 QPKKKKPLLVI----SPISNLKKMYGEEVVGKRVKVYWPLDKNWYEGIVKNFDDLSGKHL 397
           Q K KKPLLVI    SP  +   +YG+E V +RV+VYWPLDK+WYEG+VK++DD S KHL
Sbjct: 73  QSKPKKPLLVIGQTPSPSPSKVGVYGKEAVERRVRVYWPLDKSWYEGLVKSYDDESKKHL 132

Query: 398 VQYDDAEEELLDF--------QDXXXXXXXXXXXXXSFRRLKRSNGESEVKEKDDGNVVX 553
           +QYDD+EEELLD         +               FR++   + E E  E D+G    
Sbjct: 133 IQYDDSEEELLDLNNEKIEWVEPCVKKFKRLRRGSLGFRKIVLEDDEMENVEGDNGGA-- 190

Query: 554 XXXXXXXXXXXXXXXXWGKNAKND 625
                           WGKNA+ D
Sbjct: 191 ---GGGSGGDDSSDEDWGKNAEKD 211


>gb|AAT67045.1| DNA mismatch repair protein [Petunia x hybrida]
          Length = 1303

 Score =  100 bits (248), Expect = 3e-19
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = +2

Query: 242 KKPLLVISPISNLKKMYGEEVVGKRVKVYWPLDKNWYEGIVKNFDDLSGKHLVQYDDAEE 421
           K+ L +  P   LKK YG+EVV KRVKVYWPLDKNWYEG VK+FD  SGKHLV+YDD EE
Sbjct: 67  KRKLTLPIPTLVLKKSYGQEVVDKRVKVYWPLDKNWYEGFVKSFDSASGKHLVEYDDGEE 126

Query: 422 ELLDFQDXXXXXXXXXXXXXSFRRLKRSNGESEVKEKDD 538
           E+++  +              FRRL+R +   E +++++
Sbjct: 127 EMIELAE-EKIEWVEEAPARKFRRLRRFSVVEEAEKEEE 164