BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017851
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17575.3| unnamed protein product [Vitis vinifera]               69   5e-10
ref|XP_002327707.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
ref|NP_178248.2| pentatricopeptide repeat-containing protein [Ar...    55   6e-06
ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arab...    55   6e-06

>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/64 (54%), Positives = 44/64 (68%)
 Frame = -3

Query: 193 LHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRNTIGMISNILRYSTWDSAQEQLDK 14
           LH F  KK ++   +K  KP + +  D K   +YMR+TIG IS ILRY TWDSAQEQL+K
Sbjct: 96  LHQFRQKKPVQRTSQKFRKPTEKENVDHK---IYMRDTIGNISKILRYLTWDSAQEQLEK 152

Query: 13  LSIK 2
           LSI+
Sbjct: 153 LSIR 156


>ref|XP_002327707.1| predicted protein [Populus trichocarpa] gi|222836792|gb|EEE75185.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 VKGLHSFEHKKYIRPFKRKMGKPI-KSKTNDQKDP-KVYMRNTIGMISNILRYSTWDSAQ 29
           +K LH  + +   R F RK   P  KS +++  +P K+YMR+ I  I  IL+YSTWDSAQ
Sbjct: 1   IKCLHQSKPQNLTRFFTRKPRNPKPKSPSSNVIEPQKIYMRDIISNIYKILKYSTWDSAQ 60

Query: 28  EQLDKLSIK 2
           E+L KL+IK
Sbjct: 61  EELTKLNIK 69


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/87 (36%), Positives = 48/87 (55%)
 Frame = -3

Query: 262 YRVHGLLRTFANSKLIKYVNVKGLHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRN 83
           Y+ HG +R      L+   + + +HS    K        M K  K K  D+  P+ YMRN
Sbjct: 22  YKFHGFIRI-----LVPSPSTRAMHSLNQSK-------PMKKAEKLKLKDE--PREYMRN 67

Query: 82  TIGMISNILRYSTWDSAQEQLDKLSIK 2
            IG I N+L+YS+W+SA++ L+ LS+K
Sbjct: 68  VIGKIYNMLKYSSWESAEQDLNNLSMK 94


>ref|NP_178248.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546783|sp|Q9ZU29.2|PP139_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01390 gi|330250351|gb|AEC05445.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/68 (47%), Positives = 38/68 (55%)
 Frame = -3

Query: 205 NVKGLHSFEHKKYIRPFKRKMGKPIKSKTNDQKDPKVYMRNTIGMISNILRYSTWDSAQE 26
           +VK LHS    K     KR   KP   KT    DP VY R+ +  I NIL+YS WDSAQE
Sbjct: 20  SVKLLHSLPRLKPTNS-KRFSQKPKLVKTQTLPDPSVYTRDIVSNIYNILKYSNWDSAQE 78

Query: 25  QLDKLSIK 2
           QL  L ++
Sbjct: 79  QLPHLGVR 86


>ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
           lyrata] gi|297320908|gb|EFH51329.1| hypothetical protein
           ARALYDRAFT_322482 [Arabidopsis lyrata subsp. lyrata]
          Length = 582

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = -3

Query: 205 NVKGLHSFEHKKYIRPF--KRKMGKPIKSKTNDQKDPKVYMRNTIGMISNILRYSTWDSA 32
           +VK LH+    K   P   KR   KP   KT    D KVY R+ +  I NIL+YSTW+SA
Sbjct: 21  SVKLLHALPRPKPRNPTNSKRFFQKPKLVKTQSPPDLKVYTRDIVSNIYNILKYSTWESA 80

Query: 31  QEQLDKLSIK 2
           QEQL  L ++
Sbjct: 81  QEQLPHLGVR 90