BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017844
         (1279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH...   440   e-121
emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]   436   e-120
ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycin...   413   e-113
ref|XP_002316899.1| predicted protein [Populus trichocarpa] gi|2...   409   e-112
ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabi...   409   e-112

>ref|XP_002282453.1| PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera]
            gi|302142996|emb|CBI20291.3| unnamed protein product
            [Vitis vinifera]
          Length = 321

 Score =  440 bits (1131), Expect = e-121
 Identities = 217/275 (78%), Positives = 251/275 (91%)
 Frame = -1

Query: 1144 SPVAGICHEVHAYRRDADDVLLKGVADKNTVEAVRHILEMARRASSRREVLHTDFLTPPI 965
            S  +G+CH   A + DA+  LLKGVAD++T+EAV+HILEMA+RAS+RREVLHTDFLTPP+
Sbjct: 48   SSASGMCHLAQAMKGDANS-LLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPV 106

Query: 964  LKESMHVLEKLADVKAVAQGGYPQAERCRLTVGHSEAMATVPDVVTSLSITGNFGFQPCS 785
            LKESM VLEKLAD+KAVAQGGYPQAERCRL+VGHSE + T PD+V +L ITGNFGFQ CS
Sbjct: 107  LKESMIVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCS 166

Query: 784  HGDFLGAILGVGIAREKLGDILLQGEKGAHILVVPELVDFLVTSLDKVGNVPVSCTKIPL 605
            HGDFLGAILG GIAREKLGDI+LQGEKGA +L+VPELVDFLV+SL+KVGNV VSCTK+PL
Sbjct: 167  HGDFLGAILGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPL 226

Query: 604  LALEYEPPRTKSFKTIEASLRVDAIASAGFKVSRSKLVDLISNGDVRLNWSLVTKNGATL 425
            LALEYE PRT +FKTIE SLRVDA+ASAGFK+SRSKLVDLISNGDVR+NW+ VTKNG TL
Sbjct: 227  LALEYEEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTL 286

Query: 424  KTGDIISVSGKGRLKIGEINTTRKGKFAVELIQYL 320
            KTGD++SVSGKGRLKIGEIN+T+KGK+AVELI++L
Sbjct: 287  KTGDVVSVSGKGRLKIGEINSTKKGKYAVELIRFL 321


>emb|CAN67613.1| hypothetical protein VITISV_010260 [Vitis vinifera]
          Length = 269

 Score =  436 bits (1121), Expect = e-120
 Identities = 215/270 (79%), Positives = 248/270 (91%)
 Frame = -1

Query: 1129 ICHEVHAYRRDADDVLLKGVADKNTVEAVRHILEMARRASSRREVLHTDFLTPPILKESM 950
            +CH   A + DA+  LLKGVAD++T+EAV+HILEMA+RAS+RREVLHTDFLTPP+LKESM
Sbjct: 1    MCHLAQAMKGDANS-LLKGVADRSTIEAVKHILEMAKRASARREVLHTDFLTPPVLKESM 59

Query: 949  HVLEKLADVKAVAQGGYPQAERCRLTVGHSEAMATVPDVVTSLSITGNFGFQPCSHGDFL 770
             VLEKLAD+KAVAQGGYPQAERCRL+VGHSE + T PD+V +L ITGNFGFQ CSHGDFL
Sbjct: 60   IVLEKLADMKAVAQGGYPQAERCRLSVGHSEVLTTAPDIVAALRITGNFGFQSCSHGDFL 119

Query: 769  GAILGVGIAREKLGDILLQGEKGAHILVVPELVDFLVTSLDKVGNVPVSCTKIPLLALEY 590
            GAILG GIAREKLGDI+LQGEKGA +L+VPELVDFLV+SL+KVGNV VSCTK+PLLALEY
Sbjct: 120  GAILGTGIAREKLGDIILQGEKGAQVLIVPELVDFLVSSLEKVGNVSVSCTKMPLLALEY 179

Query: 589  EPPRTKSFKTIEASLRVDAIASAGFKVSRSKLVDLISNGDVRLNWSLVTKNGATLKTGDI 410
            E PRT +FKTIE SLRVDA+ASAGFK+SRSKLVDLISNGDVR+NW+ VTKNG TLKTGD+
Sbjct: 180  EEPRTTTFKTIELSLRVDALASAGFKLSRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDV 239

Query: 409  ISVSGKGRLKIGEINTTRKGKFAVELIQYL 320
            +SVSGKGRLKIGEIN+T+KGK+AVELI++L
Sbjct: 240  VSVSGKGRLKIGEINSTKKGKYAVELIRFL 269


>ref|NP_001241156.1| uncharacterized protein LOC100793767 [Glycine max]
            gi|255642537|gb|ACU21532.1| unknown [Glycine max]
          Length = 324

 Score =  413 bits (1061), Expect = e-113
 Identities = 201/278 (72%), Positives = 246/278 (88%)
 Frame = -1

Query: 1153 INFSPVAGICHEVHAYRRDADDVLLKGVADKNTVEAVRHILEMARRASSRREVLHTDFLT 974
            ++ S  +G+   V A + + D +LLKGV +++  + V+HILEMARRAS +RE+LHTDFLT
Sbjct: 48   VSTSLASGVSQTVQALKGEVD-LLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLT 106

Query: 973  PPILKESMHVLEKLADVKAVAQGGYPQAERCRLTVGHSEAMATVPDVVTSLSITGNFGFQ 794
            PP+LKESM VLEKLADVKA+AQGGYPQAERCR++VGH E + + PD++++LSITGNF F+
Sbjct: 107  PPVLKESMQVLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFE 166

Query: 793  PCSHGDFLGAILGVGIAREKLGDILLQGEKGAHILVVPELVDFLVTSLDKVGNVPVSCTK 614
            PCSHGDFLG+ILG GI REKLGDI+LQGE+GA I+VVPELV+FL+++L KV NVPVSCTK
Sbjct: 167  PCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTK 226

Query: 613  IPLLALEYEPPRTKSFKTIEASLRVDAIASAGFKVSRSKLVDLISNGDVRLNWSLVTKNG 434
            IPL++L+YEPPRTKSFKTIEASLRVDA+ASAGFKVSRSKLVD+ISNGDVR+NW  VT  G
Sbjct: 227  IPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKG 286

Query: 433  ATLKTGDIISVSGKGRLKIGEINTTRKGKFAVELIQYL 320
             TLK+GDI+S+SGKGRLKIGEIN+T+KGKFAVELI+YL
Sbjct: 287  TTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 324


>ref|XP_002316899.1| predicted protein [Populus trichocarpa] gi|222859964|gb|EEE97511.1|
            predicted protein [Populus trichocarpa]
          Length = 268

 Score =  409 bits (1052), Expect = e-112
 Identities = 203/270 (75%), Positives = 235/270 (87%)
 Frame = -1

Query: 1129 ICHEVHAYRRDADDVLLKGVADKNTVEAVRHILEMARRASSRREVLHTDFLTPPILKESM 950
            +CH   A + +   V LKGV DK+ +E V+ IL+MARRAS RREVLHTDFLTPP LKES+
Sbjct: 1    MCHVAQATKGEV--VALKGVEDKSVIEEVKRILDMARRASLRREVLHTDFLTPPTLKESL 58

Query: 949  HVLEKLADVKAVAQGGYPQAERCRLTVGHSEAMATVPDVVTSLSITGNFGFQPCSHGDFL 770
            HVLEKLADVKA+AQGGYPQAERCRL+VGH E + + PD+V +LSITGNFGFQ CSHGDFL
Sbjct: 59   HVLEKLADVKAIAQGGYPQAERCRLSVGHPETLTSDPDIVAALSITGNFGFQLCSHGDFL 118

Query: 769  GAILGVGIAREKLGDILLQGEKGAHILVVPELVDFLVTSLDKVGNVPVSCTKIPLLALEY 590
            GAILG GIAR KLGDI++ G K A +L+VP+LVD++V+SLDKVG+V VSCT IPL A+EY
Sbjct: 119  GAILGTGIARNKLGDIIVLGGKRAQVLLVPDLVDYIVSSLDKVGDVSVSCTPIPLHAIEY 178

Query: 589  EPPRTKSFKTIEASLRVDAIASAGFKVSRSKLVDLISNGDVRLNWSLVTKNGATLKTGDI 410
            EPPRTKSFKT+EASLRVDA+ASAGFK+SRSKLVDLISN DVR+NW+ +TKN  TLKTGD+
Sbjct: 179  EPPRTKSFKTVEASLRVDALASAGFKISRSKLVDLISNKDVRVNWTTITKNNTTLKTGDV 238

Query: 409  ISVSGKGRLKIGEINTTRKGKFAVELIQYL 320
            +SVSGKGRLKIGEINTTRKGKFAVELI YL
Sbjct: 239  VSVSGKGRLKIGEINTTRKGKFAVELIHYL 268


>ref|NP_564622.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana]
            gi|16648939|gb|AAL24321.1| Unknown protein [Arabidopsis
            thaliana] gi|24899783|gb|AAN65106.1| Unknown protein
            [Arabidopsis thaliana] gi|27311617|gb|AAO00774.1| Unknown
            protein [Arabidopsis thaliana] gi|30984534|gb|AAP42730.1|
            At1g53120 [Arabidopsis thaliana]
            gi|332194772|gb|AEE32893.1| RNA-binding S4
            domain-containing protein [Arabidopsis thaliana]
          Length = 320

 Score =  409 bits (1051), Expect = e-112
 Identities = 198/269 (73%), Positives = 237/269 (88%)
 Frame = -1

Query: 1126 CHEVHAYRRDADDVLLKGVADKNTVEAVRHILEMARRASSRREVLHTDFLTPPILKESMH 947
            C+   A + D D  LLKGV D+   + V+ ILEMARRASS+REVLHTDFLTPPI+KES+ 
Sbjct: 53   CYSAEAIKGDVD-FLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVS 111

Query: 946  VLEKLADVKAVAQGGYPQAERCRLTVGHSEAMATVPDVVTSLSITGNFGFQPCSHGDFLG 767
            +LEK ADVK VAQGGYP+AERCR+++GH + + + PD+V +LSITGNFGFQPCSHGDFLG
Sbjct: 112  LLEKFADVKIVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLG 171

Query: 766  AILGVGIAREKLGDILLQGEKGAHILVVPELVDFLVTSLDKVGNVPVSCTKIPLLALEYE 587
            AILG GI+REKLGDIL+Q EKGA +L+VPELVDF+VT+LDKVGNV V+C+KIPLLALEYE
Sbjct: 172  AILGTGISREKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYE 231

Query: 586  PPRTKSFKTIEASLRVDAIASAGFKVSRSKLVDLISNGDVRLNWSLVTKNGATLKTGDII 407
            PPRT SFKT+EASLR+DA+ASAGFK+SRSKLVDLIS+ DVR+NW+ VTKNG  +KTGD++
Sbjct: 232  PPRTNSFKTVEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVV 291

Query: 406  SVSGKGRLKIGEINTTRKGKFAVELIQYL 320
            SVSGKGRLKIGEIN T+KGKFAVE+I+YL
Sbjct: 292  SVSGKGRLKIGEINETKKGKFAVEIIRYL 320