BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017833
         (1514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 is...   607   e-171
emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]   605   e-170
ref|XP_002520330.1| replication factor C / DNA polymerase III ga...   596   e-168
ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|2...   586   e-165
ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [V...   585   e-165

>ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera]
            gi|302141781|emb|CBI18984.3| unnamed protein product
            [Vitis vinifera]
          Length = 341

 Score =  607 bits (1564), Expect = e-171
 Identities = 301/340 (88%), Positives = 323/340 (95%)
 Frame = +1

Query: 40   MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 219
            MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 220  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 399
            AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG+  RQGGYPCPPYKIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120

Query: 400  LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 579
            LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 580  SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELIGVSGVI 759
            SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LI VSGV+
Sbjct: 181  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240

Query: 760  PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 939
            PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM  QLF+VVVE+ DISDEQKARIC
Sbjct: 241  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299

Query: 940  RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 1059
            ++L EADKCL+DGADEYLQL+DVAS  M+ALCNMPEEF +
Sbjct: 300  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 339


>emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
          Length = 341

 Score =  605 bits (1559), Expect = e-170
 Identities = 300/340 (88%), Positives = 322/340 (94%)
 Frame = +1

Query: 40   MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 219
            MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 220  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 399
            AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA VAVG+  RQGGYPCPPYKIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120

Query: 400  LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 579
            LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 580  SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELIGVSGVI 759
            SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LI VSGV+
Sbjct: 181  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240

Query: 760  PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 939
            PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM  QLF+VVVE+ DISDEQKARIC
Sbjct: 241  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299

Query: 940  RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 1059
            ++L EADKCL+DGADEYLQL+DVAS  M+ALCNMPEEF +
Sbjct: 300  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 339


>ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540549|gb|EEF42116.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 342

 Score =  596 bits (1536), Expect = e-168
 Identities = 288/340 (84%), Positives = 321/340 (94%)
 Frame = +1

Query: 40   MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 219
            MAP++ S+QPWVEKYRPKQVKDVAHQ+EV+RVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60

Query: 220  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 399
            AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK+FAAVAVG+  R GGYPCPPYKIII
Sbjct: 61   AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120

Query: 400  LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 579
            LDEADSMTEDAQNALRRTMETYSKVTRFF++CNYISRIIEPLASRCAKFRFKPLSE+IM+
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180

Query: 580  SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELIGVSGVI 759
            SR+LHIC+EEGLNLD EALSTLS +SQGDLRRAITYLQGAARL+GST+S+K+LI VSGVI
Sbjct: 181  SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240

Query: 760  PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 939
            PQE V  L++AC+SG+F+ ANKEV N+IAEGYPVSQM  QL EVVVE++DISDEQKA+IC
Sbjct: 241  PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQIC 300

Query: 940  RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 1059
            + LG ADKCL+DGADEYLQL+DVAS TM+ALCNMP+EF Y
Sbjct: 301  KSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPY 340


>ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1|
            predicted protein [Populus trichocarpa]
          Length = 342

 Score =  586 bits (1511), Expect = e-165
 Identities = 284/341 (83%), Positives = 318/341 (93%)
 Frame = +1

Query: 40   MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 219
            MAP++ S+Q WVEKYRPKQ+KDVAHQDEV+RVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60

Query: 220  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 399
            AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG+  RQG YPCPPYKIII
Sbjct: 61   AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120

Query: 400  LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 579
            LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPL E+IM+
Sbjct: 121  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180

Query: 580  SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELIGVSGVI 759
            +RILHIC EEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGS++S+K+LI VSG I
Sbjct: 181  NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI 240

Query: 760  PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 939
            P+EV + +++ACK+G+F+ ANKEV +VIAEGYPVSQM +QLFEVVVE +DISDEQKARIC
Sbjct: 241  PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARIC 300

Query: 940  RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSYN 1062
            + L  ADKCL+DGADEYLQL+DV S TM++LCNMP+EFSY+
Sbjct: 301  KSLATADKCLVDGADEYLQLLDVVSNTMRSLCNMPQEFSYD 341


>ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
          Length = 334

 Score =  585 bits (1509), Expect = e-165
 Identities = 294/340 (86%), Positives = 316/340 (92%)
 Frame = +1

Query: 40   MAPVIPSTQPWVEKYRPKQVKDVAHQDEVIRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 219
            MAPV+ S+QPWVEKYRPKQVKDVAHQDEV+RVLTNTLETTNCPHMLFYGPPGTGKTTTAL
Sbjct: 1    MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60

Query: 220  AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTRGRQGGYPCPPYKIII 399
            AIAHQLFG       VLELNASDDRGINVVRTKIKDFAAVAVG+  RQGGYPCPPYKIII
Sbjct: 61   AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113

Query: 400  LDEADSMTEDAQNALRRTMETYSKVTRFFYICNYISRIIEPLASRCAKFRFKPLSEDIMT 579
            LDEADSMTEDAQNALRRTMETYSKVTRFF+ICNYISRIIEPLASRCAKFRFKPLSE+IM+
Sbjct: 114  LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173

Query: 580  SRILHICKEEGLNLDPEALSTLSSISQGDLRRAITYLQGAARLFGSTVSAKELIGVSGVI 759
            SRILHICKEE LNLD EALSTLSSISQGDLRRAITYLQGAARLFGS +S+K+LI VSGV+
Sbjct: 174  SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 233

Query: 760  PQEVVQTLFSACKSGEFESANKEVTNVIAEGYPVSQMFSQLFEVVVESNDISDEQKARIC 939
            PQ VVQ LF+ACKSG+F+SANKEV NVIAEGYPVSQM  QLF+VVVE+ DISDEQKARIC
Sbjct: 234  PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 292

Query: 940  RKLGEADKCLIDGADEYLQLMDVASTTMKALCNMPEEFSY 1059
            ++L EADKCL+DGADEYLQL+DVAS  M+ALCNMPEEF +
Sbjct: 293  KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPH 332