BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017827
         (583 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloro...   335   4e-90
emb|CBI20115.3| unnamed protein product [Vitis vinifera]              323   2e-86
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro...   323   2e-86
ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g...   321   6e-86
ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana...   321   6e-86

>ref|XP_004146016.1| PREDICTED: 50S ribosomal protein L13, chloroplastic-like [Cucumis
           sativus] gi|449518653|ref|XP_004166351.1| PREDICTED: 50S
           ribosomal protein L13, chloroplastic-like [Cucumis
           sativus]
          Length = 248

 Score =  335 bits (858), Expect = 4e-90
 Identities = 157/186 (84%), Positives = 172/186 (92%)
 Frame = -2

Query: 582 TLSLTQKPLQVRSQDLSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVD 403
           T +  +  LQVR+Q+L  VP EQRWMF  DE+ GPDIWNKTWYPKA+DH+NT+K WY+VD
Sbjct: 57  TSNSKRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVD 116

Query: 402 ATDKVLGRLSSTIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSG 223
           ATDK+LGRL+STIAN+IRGK+L TYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSG
Sbjct: 117 ATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSG 176

Query: 222 RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPID 43
           RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+D
Sbjct: 177 RPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVD 236

Query: 42  LPIRDK 25
           LPIRDK
Sbjct: 237 LPIRDK 242


>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  323 bits (827), Expect = 2e-86
 Identities = 154/185 (83%), Positives = 167/185 (90%), Gaps = 1/185 (0%)
 Frame = -2

Query: 576 SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDA 400
           S  ++  +V  QD  ++VP +QRWMF   E+SGPDIWNKTWYPKA+DHINT+K WYIVDA
Sbjct: 184 SFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDA 243

Query: 399 TDKVLGRLSSTIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 220
           TDK+LGRL+STIA YIRGKNL TYTPSVDMG+FVIVVNAEKVAVSGKKRTQKLYRRHSGR
Sbjct: 244 TDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGR 303

Query: 219 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDL 40
           PGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQ PIDL
Sbjct: 304 PGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDL 363

Query: 39  PIRDK 25
           PIRDK
Sbjct: 364 PIRDK 368


>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis
           vinifera]
          Length = 235

 Score =  323 bits (827), Expect = 2e-86
 Identities = 154/185 (83%), Positives = 167/185 (90%), Gaps = 1/185 (0%)
 Frame = -2

Query: 576 SLTQKPLQVRSQD-LSIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDA 400
           S  ++  +V  QD  ++VP +QRWMF   E+SGPDIWNKTWYPKA+DHINT+K WYIVDA
Sbjct: 45  SFPRQSFRVNCQDKAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDA 104

Query: 399 TDKVLGRLSSTIANYIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 220
           TDK+LGRL+STIA YIRGKNL TYTPSVDMG+FVIVVNAEKVAVSGKKRTQKLYRRHSGR
Sbjct: 105 TDKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGR 164

Query: 219 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDL 40
           PGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQ PIDL
Sbjct: 165 PGGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDL 224

Query: 39  PIRDK 25
           PIRDK
Sbjct: 225 PIRDK 229


>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
           gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score =  321 bits (822), Expect = 6e-86
 Identities = 148/170 (87%), Positives = 161/170 (94%)
 Frame = -2

Query: 534 SIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKVLGRLSSTIANY 355
           S+VP  QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDK+LGRL+STIAN+
Sbjct: 67  SLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANH 126

Query: 354 IRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQR 175
           IRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFDQLQQR
Sbjct: 127 IRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQR 186

Query: 174 IPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 25
           IPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 187 IPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 236


>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
           gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
           ribosomal protein L13, chloroplastic; AltName:
           Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473;
           Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
           Ribosomal protein L13 [Arabidopsis thaliana]
           gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
           protein L13 [Arabidopsis thaliana]
           gi|7572938|emb|CAA60775.1| ribosomal protein L13
           [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
           putative ribosomal protein L13 [Arabidopsis thaliana]
           gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
           [Arabidopsis thaliana]
          Length = 241

 Score =  321 bits (822), Expect = 6e-86
 Identities = 148/170 (87%), Positives = 161/170 (94%)
 Frame = -2

Query: 534 SIVPQEQRWMFADDEISGPDIWNKTWYPKASDHINTDKKWYIVDATDKVLGRLSSTIANY 355
           S+VP  QRWMF ++E +GPDIWN TWYPKASDH+NTDK W++VDATDK+LGRL+STIAN+
Sbjct: 66  SLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANH 125

Query: 354 IRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQR 175
           IRGKNL +YTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGRPGGMTVETFDQLQQR
Sbjct: 126 IRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQR 185

Query: 174 IPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQTPIDLPIRDK 25
           IPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQ P+DLPIRDK
Sbjct: 186 IPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLPIRDK 235