BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017815
         (651 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   157   2e-36
ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|2...   157   2e-36
ref|XP_003588687.1| Pentatricopeptide repeat-containing protein ...   150   2e-34
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   147   2e-33
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32

>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
           gi|296081989|emb|CBI20994.3| unnamed protein product
           [Vitis vinifera]
          Length = 597

 Score =  157 bits (397), Expect = 2e-36
 Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 10/155 (6%)
 Frame = -1

Query: 435 GIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAPPVLNLIIDLLGKSRDFDSAW 256
           GI+P   LL  I   F++SPKPLFTLF+WA+KQP + S+  + N +ID+L KSR FDSAW
Sbjct: 98  GIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFESSMTLFNSMIDVLAKSRAFDSAW 157

Query: 255 SLLLDHF-------MVTNHTFALLIRRYARAGMPFAAIRTYQYVSSLEF---KCVDLDLF 106
            L+LD         +V+++TFA+LIRRYARAGM  +AIRT+++  SL+    +  +  LF
Sbjct: 158 LLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSAIRTFEFAFSLDSIRDRDSEWSLF 217

Query: 105 EVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVR 1
           ++LLD+LCKEGHVRVAS    ++RGLD  WVP++R
Sbjct: 218 KILLDSLCKEGHVRVASEYFDQQRGLDPSWVPSIR 252


>ref|XP_002308636.1| predicted protein [Populus trichocarpa] gi|222854612|gb|EEE92159.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score =  157 bits (396), Expect = 2e-36
 Identities = 101/242 (41%), Positives = 131/242 (54%), Gaps = 25/242 (10%)
 Frame = -1

Query: 651 RSPTFLRHFS------SWLSSPGNPLIKWPTQTETEAPHHDQLQPQSHP--------HQ- 517
           R P   RHFS      SWL+  GNPLIKWP      AP     Q  S P        HQ 
Sbjct: 22  RKPPHNRHFSAVSSAESWLAVQGNPLIKWPHNPNL-APSPSADQQNSSPTSNSNPNYHQN 80

Query: 516 DCTTVYKXXXXXXXXXXXXXXXXXXXTGIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQ 337
           D  T+                     TGI+P   L+ ++   F+SSPK L ++F WA K+
Sbjct: 81  DFFTLCNILKDPKIQLGPSLRTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKK 140

Query: 336 PSYCSAPPVLNLIIDLLGKSRDFDSAWSLLLDHF-------MVTNHTFALLIRRYARAGM 178
           P + S+  + N +++ LGK+R+F SAW LLLD         +V++ TFA+LIRRY RAGM
Sbjct: 141 PGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGM 200

Query: 177 PFAAIRTYQYVSSLEF---KCVDLDLFEVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPT 7
             AAIRT++Y SSL+          LFE+LLD+LCKEGHVRVA+    R+   D  WVP+
Sbjct: 201 SEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPS 260

Query: 6   VR 1
           VR
Sbjct: 261 VR 262


>ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477735|gb|AES58938.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 587

 Score =  150 bits (380), Expect = 2e-34
 Identities = 91/237 (38%), Positives = 125/237 (52%), Gaps = 22/237 (9%)
 Frame = -1

Query: 645 PTFLRHFSSWLSSPGNPLIKWPTQTETEAP----------HHDQLQPQSHPHQDCTTVYK 496
           P  LR FSSWLS PGNPLI WP+      P            +  QP   P+ D T +  
Sbjct: 20  PIHLRPFSSWLSQPGNPLINWPSLPSKPTPIPTLNPNPNSKPESSQPTFSPN-DFTLIST 78

Query: 495 XXXXXXXXXXXXXXXXXXXTGIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAP 316
                              TGI+P P LL  +   F SSPK L +L+ WA+ QP +    
Sbjct: 79  LFTNPSISPGSSLLTNLTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDS 138

Query: 315 PVLNLIIDLLGKSRDFDSAWSLLLDHF---------MVTNHTFALLIRRYARAGMPFAAI 163
            + + +I+ L K ++FD AWSL+LD           +V+  TFA++IRRYARAGM  AAI
Sbjct: 139 SLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAI 198

Query: 162 RTYQYV---SSLEFKCVDLDLFEVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVR 1
           RT+++     S+     ++ LFE+L+D+LCKEG  R AS  + RR+  D  WVP++R
Sbjct: 199 RTFEFAKDKKSIVDSVSEMSLFEILIDSLCKEGSAREASEYLLRRKETDLGWVPSIR 255


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  147 bits (370), Expect = 2e-33
 Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 3/148 (2%)
 Frame = -1

Query: 435 GIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAPPVLNLIIDLLGKSRDFDSAW 256
           GI+P  +LL  +   F SSPK L +LF WA KQP + S+  + N +I+ LGK ++FDSAW
Sbjct: 84  GIKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAW 143

Query: 255 SLLLDHF-MVTNHTFALLIRRYARAGMPFAAIRTYQYVSSLEFKC-VDLD-LFEVLLDTL 85
            L+LD   +V++ TFA+LIRRY RAGMP +AIRT++Y  SL+F C  + D L E+LLD+L
Sbjct: 144 CLVLDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFEYAISLDFICDYNCDALLEILLDSL 203

Query: 84  CKEGHVRVASGCVTRRRGLDSEWVPTVR 1
           CKEGHVRVA      R+ LDS W+P VR
Sbjct: 204 CKEGHVRVAKEYFDSRKQLDSCWIPHVR 231


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  144 bits (364), Expect = 1e-32
 Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 23/240 (9%)
 Frame = -1

Query: 651 RSPTFLRHFSSWLSSPGNPLIKWPTQTETEAPHHDQLQPQSHPHQD--------CTTVYK 496
           R+ T     SSWLS PGNP+I+WP+    +   +    P  +P  D         + +  
Sbjct: 39  RASTHRPFSSSWLSEPGNPIIQWPSLPPPKPTPNPNPNPNLNPTPDPPSPNPNALSVISN 98

Query: 495 XXXXXXXXXXXXXXXXXXXTGIQPGPNLLLTICKQFESSPKPLFTLFKWAVKQPSYCSAP 316
                               GI+P P LLL +  +F SSPK L +LF WA  +P++   P
Sbjct: 99  LFADPSLSPGPALHAELDRAGIEPDPALLLAVFDRFGSSPKLLHSLFLWAQTRPAFRPGP 158

Query: 315 PVLNLIIDLLGKSRDFDSAWSLLLDHF------------MVTNHTFALLIRRYARAGMPF 172
            + + +++ L K+R+FD+AW L+L H             +V+  TFA++IRRYARAGM  
Sbjct: 159 KLFDAVVNALAKAREFDAAWKLVLHHAEKDGEEEGEKERLVSVGTFAIMIRRYARAGMSK 218

Query: 171 AAIRTYQYVS---SLEFKCVDLDLFEVLLDTLCKEGHVRVASGCVTRRRGLDSEWVPTVR 1
            AIRTY++ +   S+     ++ L E+L+D+LCKEG VR AS     ++ LD  WVP++R
Sbjct: 219 LAIRTYEFATNNKSIVDSGSEMSLLEILMDSLCKEGSVREASEYFLWKKELDLSWVPSIR 278