BLASTX nr result
ID: Coptis24_contig00017730
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017730 (738 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [... 231 2e-58 ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [... 228 1e-57 ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|2... 228 1e-57 ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] g... 224 1e-56 ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-l... 224 2e-56 >ref|XP_002271081.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|297743547|emb|CBI36414.3| unnamed protein product [Vitis vinifera] Length = 346 Score = 231 bits (588), Expect = 2e-58 Identities = 119/179 (66%), Positives = 136/179 (75%) Frame = +1 Query: 1 SEDEPLSIVLMKNGRKVICGTQNGVLLLYSWGYFKDCSDRFTGFQSNSIDVLLKLDEDRV 180 SEDE LS+V+MKNGRKVICGTQ+G LLLYSWG+FKDCSDRF NS+D LLKLDEDRV Sbjct: 177 SEDELLSVVIMKNGRKVICGTQSGALLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDRV 236 Query: 181 ITGTENGLISLIGILPNRIIQPIAEHSEYPVERLAYSHDRKFLGSISHDQMLKLWDLDDL 360 ITG+ENGLISL+GILPNRIIQPIAEHSEYPVERLA+S DRK+LGSISHDQMLKLWDLDDL Sbjct: 237 ITGSENGLISLVGILPNRIIQPIAEHSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDL 296 Query: 361 LQGSSDVPRSQSAVAXXXXXXXXXXXXTNPXXXXXXXXXXXXXXXQRALDASNNFFADL 537 LQGS RSQ A+A ++ +AL++S++FFADL Sbjct: 297 LQGSGSTLRSQEAMA---------DSDSDEMDVDAKETKRKTASNGQALNSSSSFFADL 346 >ref|XP_002269842.1| PREDICTED: WD repeat-containing protein 55 [Vitis vinifera] gi|298205166|emb|CBI17225.3| unnamed protein product [Vitis vinifera] Length = 346 Score = 228 bits (580), Expect = 1e-57 Identities = 118/179 (65%), Positives = 135/179 (75%) Frame = +1 Query: 1 SEDEPLSIVLMKNGRKVICGTQNGVLLLYSWGYFKDCSDRFTGFQSNSIDVLLKLDEDRV 180 SEDE LS+VLMKNGRKVICGTQ+G LLLYSWG+FKDCSDRF NS+D LLKLDED V Sbjct: 177 SEDELLSVVLMKNGRKVICGTQSGALLLYSWGHFKDCSDRFIDLSPNSVDALLKLDEDSV 236 Query: 181 ITGTENGLISLIGILPNRIIQPIAEHSEYPVERLAYSHDRKFLGSISHDQMLKLWDLDDL 360 ITG+ENGLISL+GILPNRIIQPIAEHSEYPVERLA+S DRK+LGSISHDQMLKLWDLDDL Sbjct: 237 ITGSENGLISLVGILPNRIIQPIAEHSEYPVERLAFSFDRKYLGSISHDQMLKLWDLDDL 296 Query: 361 LQGSSDVPRSQSAVAXXXXXXXXXXXXTNPXXXXXXXXXXXXXXXQRALDASNNFFADL 537 LQGS RS+ A+A ++ +AL++S++FFADL Sbjct: 297 LQGSGSTLRSREAMA---------DSDSDEMDVDAKETKRKTASNGQALNSSSSFFADL 346 >ref|XP_002305841.1| predicted protein [Populus trichocarpa] gi|222848805|gb|EEE86352.1| predicted protein [Populus trichocarpa] Length = 348 Score = 228 bits (580), Expect = 1e-57 Identities = 107/135 (79%), Positives = 122/135 (90%) Frame = +1 Query: 1 SEDEPLSIVLMKNGRKVICGTQNGVLLLYSWGYFKDCSDRFTGFQSNSIDVLLKLDEDRV 180 SE+E LS+V+MKNGRKVICG+QNG LLLYSWG+FKDCSDRFTG NSID LLKLDEDRV Sbjct: 176 SEEELLSVVIMKNGRKVICGSQNGTLLLYSWGFFKDCSDRFTGLSPNSIDALLKLDEDRV 235 Query: 181 ITGTENGLISLIGILPNRIIQPIAEHSEYPVERLAYSHDRKFLGSISHDQMLKLWDLDDL 360 ITG+ENGLISL+GILPNRIIQP+AEHSEYP+E LA+SHDRKFLGSISHDQ+LK+WDLDDL Sbjct: 236 ITGSENGLISLLGILPNRIIQPLAEHSEYPIEHLAFSHDRKFLGSISHDQVLKMWDLDDL 295 Query: 361 LQGSSDVPRSQSAVA 405 LQ S + Q+AV+ Sbjct: 296 LQNSVNAQNDQAAVS 310 >ref|XP_003609086.1| WD-40 repeat protein [Medicago truncatula] gi|355510141|gb|AES91283.1| WD-40 repeat protein [Medicago truncatula] Length = 420 Score = 224 bits (572), Expect = 1e-56 Identities = 113/181 (62%), Positives = 131/181 (72%), Gaps = 2/181 (1%) Frame = +1 Query: 1 SEDEPLSIVLMKNGRKVICGTQNGVLLLYSWGYFKDCSDRFTGFQSNSIDVLLKLDEDRV 180 SEDE LS+VLMKNGRKV+CG+Q G+LLLYSWG FKDCSDRF SNSID +LKLDEDR+ Sbjct: 240 SEDELLSVVLMKNGRKVVCGSQTGILLLYSWGCFKDCSDRFVDLASNSIDTMLKLDEDRI 299 Query: 181 ITGTENGLISLIGILPNRIIQPIAEHSEYPVERLAYSHDRKFLGSISHDQMLKLWDLDDL 360 ITG+ENG+I+L+GILPNRII+PIAEHSEYPVERLA+SHDRKFLGSI HDQMLKLWDLD++ Sbjct: 300 ITGSENGMINLVGILPNRIIEPIAEHSEYPVERLAFSHDRKFLGSIGHDQMLKLWDLDNI 359 Query: 361 LQGSSDVPRSQSAVA--XXXXXXXXXXXXTNPXXXXXXXXXXXXXXXQRALDASNNFFAD 534 LQGS R+++ V N A+ SNNFFAD Sbjct: 360 LQGSRSTQRNETGVVANDGDSDDGDEMDVDNSASKFSKGNKRKNASNGHAVGDSNNFFAD 419 Query: 535 L 537 L Sbjct: 420 L 420 >ref|XP_003535974.1| PREDICTED: WD repeat-containing protein 55-like [Glycine max] Length = 352 Score = 224 bits (570), Expect = 2e-56 Identities = 112/179 (62%), Positives = 133/179 (74%) Frame = +1 Query: 1 SEDEPLSIVLMKNGRKVICGTQNGVLLLYSWGYFKDCSDRFTGFQSNSIDVLLKLDEDRV 180 SEDE LS+VLMKNGRKV+CG+Q GV+LLYSWG FKDCSDRFT SNSID +LKLDEDR+ Sbjct: 176 SEDELLSVVLMKNGRKVVCGSQTGVILLYSWGCFKDCSDRFTDLSSNSIDAMLKLDEDRI 235 Query: 181 ITGTENGLISLIGILPNRIIQPIAEHSEYPVERLAYSHDRKFLGSISHDQMLKLWDLDDL 360 ITG+ENG+I+L+GILPNR+IQPIAEHSEYPVE LA+SHD+KFLGSI+HDQMLKLWDLD++ Sbjct: 236 ITGSENGIINLVGILPNRVIQPIAEHSEYPVECLAFSHDKKFLGSIAHDQMLKLWDLDNI 295 Query: 361 LQGSSDVPRSQSAVAXXXXXXXXXXXXTNPXXXXXXXXXXXXXXXQRALDASNNFFADL 537 LQGS + R+++ A + AL SNNFFADL Sbjct: 296 LQGSGNTQRNEAGGA--VDSDDDEMDLDDDPSKINKGNKRKNANNGNALGGSNNFFADL 352