BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017657
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...    70   9e-11
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...    69   4e-10
gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thal...    59   3e-07
gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical p...    59   3e-07
sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide...    59   3e-07

>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score = 70.1 bits (170), Expect(2) = 9e-11
 Identities = 32/56 (57%), Positives = 43/56 (76%)
 Frame = +1

Query: 1   QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 168
           QM + GFE+SI+DYSAVINRLCKRC I+E K     ML DG+SPD++++E++   F
Sbjct: 666 QMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAF 721



 Score = 21.2 bits (43), Expect(2) = 9e-11
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 161 NTFYHGRDLISVLELLG*MIKTDML 235
           N F+    + SV ELL  MIK  +L
Sbjct: 719 NAFHRAGHVHSVFELLAVMIKFGLL 743


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 1   QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 168
           QM + GFE+SIRDYSAVI RLCKRC + E K     ML DG+ PD+ L+EV+   F
Sbjct: 761 QMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAF 816


>gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana]
          Length = 337

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174
           Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GISPD  + EV+  +   L 
Sbjct: 268 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 327

Query: 175 WT 180
           WT
Sbjct: 328 WT 329


>gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174
           Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GISPD  + EV+  +   L 
Sbjct: 728 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 787

Query: 175 WT 180
           WT
Sbjct: 788 WT 789


>sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g13630
          Length = 826

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +1

Query: 1   QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174
           Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GISPD  + EV+  +   L 
Sbjct: 757 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 816

Query: 175 WT 180
           WT
Sbjct: 817 WT 818