BLASTX nr result
ID: Coptis24_contig00017657
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017657 (347 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2... 70 9e-11 ref|XP_002514579.1| pentatricopeptide repeat-containing protein,... 69 4e-10 gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thal... 59 3e-07 gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical p... 59 3e-07 sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide... 59 3e-07 >ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa] Length = 745 Score = 70.1 bits (170), Expect(2) = 9e-11 Identities = 32/56 (57%), Positives = 43/56 (76%) Frame = +1 Query: 1 QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 168 QM + GFE+SI+DYSAVINRLCKRC I+E K ML DG+SPD++++E++ F Sbjct: 666 QMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAF 721 Score = 21.2 bits (43), Expect(2) = 9e-11 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 161 NTFYHGRDLISVLELLG*MIKTDML 235 N F+ + SV ELL MIK +L Sbjct: 719 NAFHRAGHVHSVFELLAVMIKFGLL 743 >ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 840 Score = 68.9 bits (167), Expect = 4e-10 Identities = 32/56 (57%), Positives = 39/56 (69%) Frame = +1 Query: 1 QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVINQHF 168 QM + GFE+SIRDYSAVI RLCKRC + E K ML DG+ PD+ L+EV+ F Sbjct: 761 QMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAF 816 >gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana] Length = 337 Score = 59.3 bits (142), Expect = 3e-07 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 1 QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174 Q+ GF +SIRDYSAVINRLC+R ++E K ML GISPD + EV+ + L Sbjct: 268 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 327 Query: 175 WT 180 WT Sbjct: 328 WT 329 >gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464 from Arabidopsis thaliana BAC F23N19 gb|AC007190. It contains a PPR repeat domain PF|01535 [Arabidopsis thaliana] Length = 797 Score = 59.3 bits (142), Expect = 3e-07 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 1 QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174 Q+ GF +SIRDYSAVINRLC+R ++E K ML GISPD + EV+ + L Sbjct: 728 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 787 Query: 175 WT 180 WT Sbjct: 788 WT 789 >sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g13630 Length = 826 Score = 59.3 bits (142), Expect = 3e-07 Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Frame = +1 Query: 1 QMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDKKLYEVI--NQHFLP 174 Q+ GF +SIRDYSAVINRLC+R ++E K ML GISPD + EV+ + L Sbjct: 757 QLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKSDELLS 816 Query: 175 WT 180 WT Sbjct: 817 WT 818