BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017647
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529988.1| conserved hypothetical protein [Ricinus comm...   187   1e-45
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul...   186   2e-45
ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Popu...   184   8e-45
ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-...   181   7e-44
ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-li...   180   1e-43

>ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis]
           gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName:
           Full=Retinoblastoma-related protein
           gi|223530511|gb|EEF32393.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 1020

 Score =  187 bits (474), Expect = 1e-45
 Identities = 95/123 (77%), Positives = 104/123 (84%), Gaps = 2/123 (1%)
 Frame = +3

Query: 30  GAKRKFDAISSPAKTITSPLSPPRSPAFSPGK--GLHHPKMAPTPVSTAMTTAKWLRTVI 203
           G KRKFD ISSP KTITSPLSP RSPA       G  + +MA TPVSTAMTTAKWLRTVI
Sbjct: 372 GTKRKFDQISSPTKTITSPLSPHRSPASHTNGILGSTNSRMAATPVSTAMTTAKWLRTVI 431

Query: 204 SPLPSKPSAELERFLSSCDRDITNDVTRRAHIILEAIFPRTALGERCLTGTLQSSNLMDS 383
           SPLPSKPS +LERFL+SCDRD+TNDV RRAHIILEAIFP  ALGERC+TG+LQS+NLMD+
Sbjct: 432 SPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNALGERCVTGSLQSTNLMDN 491

Query: 384 IWA 392
           IWA
Sbjct: 492 IWA 494


>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
           tremuloides]
          Length = 1035

 Score =  186 bits (471), Expect = 2e-45
 Identities = 99/134 (73%), Positives = 112/134 (83%), Gaps = 4/134 (2%)
 Frame = +3

Query: 3   GSLSE-HINI-GAKRKFDAISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTA 170
           GS+S   +NI GAKRKFD ISSP KTITSPLSP RSPA       G  + KMA TPVSTA
Sbjct: 377 GSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTA 436

Query: 171 MTTAKWLRTVISPLPSKPSAELERFLSSCDRDITNDVTRRAHIILEAIFPRTALGERCLT 350
           MTTAKWLRT+ISPLPSKPSA+LERFL SCD+D+TNDV RRA IILEAIFP ++LGERC+T
Sbjct: 437 MTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTNDVIRRAQIILEAIFPSSSLGERCVT 496

Query: 351 GTLQSSNLMDSIWA 392
           G+LQS+NLMD+IWA
Sbjct: 497 GSLQSTNLMDNIWA 510


>ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]
           gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName:
           Full=Retinoblastoma-related protein
           gi|222844988|gb|EEE82535.1| hypothetical protein
           POPTRDRAFT_547794 [Populus trichocarpa]
          Length = 1035

 Score =  184 bits (466), Expect = 8e-45
 Identities = 98/134 (73%), Positives = 111/134 (82%), Gaps = 4/134 (2%)
 Frame = +3

Query: 3   GSLSE-HINI-GAKRKFDAISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTA 170
           GS+S   +NI GAKRKFD ISSP KTITSPLSP RSPA       G  + KMA TPVSTA
Sbjct: 377 GSVSAGSLNITGAKRKFDLISSPTKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTA 436

Query: 171 MTTAKWLRTVISPLPSKPSAELERFLSSCDRDITNDVTRRAHIILEAIFPRTALGERCLT 350
           MTTAKWLRT+ISPLPSKPSA+LERFL SCD+D+TNDV RRA IILEAIFP ++LGERC+ 
Sbjct: 437 MTTAKWLRTIISPLPSKPSAQLERFLVSCDKDVTNDVIRRAQIILEAIFPSSSLGERCVN 496

Query: 351 GTLQSSNLMDSIWA 392
           G+LQS+NLMD+IWA
Sbjct: 497 GSLQSTNLMDNIWA 510


>ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-like [Glycine max]
          Length = 1002

 Score =  181 bits (458), Expect = 7e-44
 Identities = 91/123 (73%), Positives = 104/123 (84%), Gaps = 2/123 (1%)
 Frame = +3

Query: 30  GAKRKFDAISSPAKTITSPLSPPRSPAFSPG--KGLHHPKMAPTPVSTAMTTAKWLRTVI 203
           G KRKFD+++SPAKTITSPLSP RSP        G  + KMA TPVSTAMTTAKWLRTVI
Sbjct: 361 GVKRKFDSMASPAKTITSPLSPHRSPTSHTNGIPGSANSKMAATPVSTAMTTAKWLRTVI 420

Query: 204 SPLPSKPSAELERFLSSCDRDITNDVTRRAHIILEAIFPRTALGERCLTGTLQSSNLMDS 383
           SPLPSKPS ELERFL+SCDRD+T+DV RRA IIL+AIFP + LGERC+TG+LQS+NLMD+
Sbjct: 421 SPLPSKPSPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDN 480

Query: 384 IWA 392
           IWA
Sbjct: 481 IWA 483


>ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus]
          Length = 1024

 Score =  180 bits (456), Expect = 1e-43
 Identities = 89/123 (72%), Positives = 105/123 (85%), Gaps = 2/123 (1%)
 Frame = +3

Query: 30  GAKRKFDAISSPAKTITSPLSPPRSPAFSPGKGLH--HPKMAPTPVSTAMTTAKWLRTVI 203
           G KRK D++ SPA+TITSP+SP RSPA      L+  + K+A TPVSTAMTTAKWLRTVI
Sbjct: 377 GIKRKLDSMCSPARTITSPMSPLRSPASHANGTLNSGNTKIAATPVSTAMTTAKWLRTVI 436

Query: 204 SPLPSKPSAELERFLSSCDRDITNDVTRRAHIILEAIFPRTALGERCLTGTLQSSNLMDS 383
           SPLP+KPS E+ERFL+SCDRD+TNDV RRAHIILEAIFP TALGERC+ G+LQS++LMD+
Sbjct: 437 SPLPAKPSVEMERFLASCDRDVTNDVVRRAHIILEAIFPNTALGERCIAGSLQSASLMDN 496

Query: 384 IWA 392
           IWA
Sbjct: 497 IWA 499