BLASTX nr result
ID: Coptis24_contig00017577
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00017577
(2154 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28171.3| unnamed protein product [Vitis vinifera] 407 e-111
emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera] 389 e-105
ref|XP_002524463.1| nucleic acid binding protein, putative [Rici... 378 e-102
ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containin... 315 2e-83
ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containin... 315 3e-83
>emb|CBI28171.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 407 bits (1045), Expect = e-111
Identities = 237/540 (43%), Positives = 321/540 (59%), Gaps = 6/540 (1%)
Frame = -2
Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1 MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60
Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINSGQSSK 1782
PPL+G E + EP +L +S PV K+N PCYFY++ FCNKGE CSFLHG + ++G +
Sbjct: 61 PPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNGFCNKGERCSFLHGPD-STGTETG 119
Query: 1781 SASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNNGL 1602
+ + +E VT+I Q K + Q V+ N
Sbjct: 120 PTLIGRRPNSVETATVTAIE----------------------TQFQPKEDLQKLVFKNAF 157
Query: 1601 HKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDPEER 1425
+S SP+I++ ++ ++S+ LLPAEG ++S L + +S+ Q D I+PEER
Sbjct: 158 EQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ----SRSLLSTDQSSEEQVDGPIEPEER 213
Query: 1424 WESSPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPLEFGDS 1245
WESSPGFDVLVD+ SENL YED+PEYLLA + E R L+ Q L YD+ED V YD L + ++
Sbjct: 214 WESSPGFDVLVDNISENLVYEDEPEYLLALEGEGRELNGQFLGYDFEDPVEYD-LMYPEA 272
Query: 1244 GILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSVRNGVD 1065
ILY+H +Y+S+D L+N++ +D V+ +P SRE +LD + R+NFP E+ ++ R+G+D
Sbjct: 273 EILYDHRIYDSFDCLDNEHSSDHVRNIPGCSRERILDPILPRKRKNFPVELAVTGRSGLD 332
Query: 1064 LRNQL-----XXXXXXXXXXXRGSLSHLKEAGQERPGRQHKRQTVHGRLTSEVASSRIGG 900
LR++L R S L +ER R Q + GR SEV + IG
Sbjct: 333 LRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRERRRRHGMDQQLQGRSASEVRKNIIGM 392
Query: 899 CNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQNARSP 720
+E++ S + +G R++ S+ SE+SR + + R
Sbjct: 393 LSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGHSQRQHIS---SEDSRKPVSRE--RIS 447
Query: 719 KESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKDKRRL 540
TTFTGPK+LA+IKEEKRK E G + T S +F+GPKPL EILKDKR+L
Sbjct: 448 TREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMGYSSNTPSADFQGPKPLSEILKDKRKL 507
>emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera]
Length = 554
Score = 389 bits (1000), Expect = e-105
Identities = 242/568 (42%), Positives = 324/568 (57%), Gaps = 32/568 (5%)
Frame = -2
Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1 MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60
Query: 1961 P-----------------------PLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSS 1851
P PL+G E + EP +L +S PV K+N PCYFY++
Sbjct: 61 PVRVMLKRIQRDSRSGLLEEKVHLPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNG 120
Query: 1850 FCNKGENCSFLHG--SNINSGQSSKSASLVANVHPLENKVVTSI-NGVTAAIELPHDESQ 1680
FCNKGE CSFLHG S+ + +S K+AS V ++ P EN + G T P+
Sbjct: 121 FCNKGERCSFLHGPDSSAPAWKSLKTASEVNDMRPPENNXIAGTETGPTLIGRRPNSVET 180
Query: 1679 SLTKVVECIQSHSKVECQPSVYNNGLHKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPV 1503
+ +E Q K + Q V+ N +S SP+I++ ++ ++S+ LLPAEG
Sbjct: 181 ATVTAIE-TQFQPKEDLQKLVFKNAFEQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ-- 237
Query: 1502 PANQSPLCAEHNSDGQFDDHIDPEERWESSPGFDVLVDDGSENLGYEDDPEYLLAQKRES 1323
++S L + +S+ Q D I+PEERWESSPGFDVLVD+ SENL YED+PEYLLA + E
Sbjct: 238 --SRSLLSTDQSSEEQVDGPIEPEERWESSPGFDVLVDNISENLVYEDEPEYLLALEGEG 295
Query: 1322 RVLHEQLLQYDYEDSVGYDPLEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREM 1143
R L+ Q L YD+ED V YD L + ++ ILY+H +Y+S+D L+N++ R
Sbjct: 296 RELNGQFLGYDFEDPVEYD-LMYPEAEILYDHRIYDSFDCLDNEH----------RREFW 344
Query: 1142 MLDTMGLPNRQNFPREVDLSVRNGVDLRNQL-----XXXXXXXXXXXRGSLSHLKEAGQE 978
+L G R+NFP E+ ++ R+G+DLR++L R S L +E
Sbjct: 345 ILFCPG--KRKNFPVELAVTGRSGLDLRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRE 402
Query: 977 RPGRQHKRQTVHGRLTSEVASSRIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXX 798
R R Q + GR SEV + IG +E++ S + +G R++ S+
Sbjct: 403 RRRRHGMDQQLQGRSASEVRKNIIGMLSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGH 462
Query: 797 XXXXXXXXRFSENSRGGTASQNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTT 618
SE+SR + + R TTFTGPK+LA+IKEEKRK E G
Sbjct: 463 SQRQHIS---SEDSRKPVSRE--RISTREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMG 517
Query: 617 NNGRTASQNFEGPKPLREILKDKRRLGS 534
+ T S +F+GPKPL EILKDKR+LGS
Sbjct: 518 YSSNTPSADFQGPKPLSEILKDKRKLGS 545
>ref|XP_002524463.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223536251|gb|EEF37903.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 530
Score = 378 bits (970), Expect = e-102
Identities = 228/545 (41%), Positives = 307/545 (56%), Gaps = 8/545 (1%)
Frame = -2
Query: 2144 KMDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFR 1965
+M++++ KRNTDCVYFLASPLTCKKG ECEYRH+EIARLNPRDCWYWLAG+C NPTCAFR
Sbjct: 2 QMEEDIQKRNTDCVYFLASPLTCKKGLECEYRHNEIARLNPRDCWYWLAGDCYNPTCAFR 61
Query: 1964 HPPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINS--GQ 1791
HPPLE +E E S +S P K+NVPCYF+F+ FCNKG+ C F+HG NS G+
Sbjct: 62 HPPLEMHAEGPPELSS----SSVPANKTNVPCYFFFNGFCNKGDRCFFMHGPEANSFTGK 117
Query: 1790 SSKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYN 1611
S ++S + PL++K+ + V+A E+ + S++ K V+ ++ + Q
Sbjct: 118 SGSTSSAIKENIPLDSKISGGNDTVSAPTEVNANPSETAAKAVKDLKLQPYEDFQFPAPE 177
Query: 1610 NGLHKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDP 1434
+ +SPSP+IAV ++ + L FLL ++S + + + DDH++P
Sbjct: 178 KTVMRSPSPQIAVSQSEEAVILNPSFLLKVNSFTE----SRSLAYTTQSPEEEMDDHVEP 233
Query: 1433 EERWESSPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPLEF 1254
EERWESSPGFDVLVDD SENL YEDD EYLL E R + L YD+E+ V YD +
Sbjct: 234 EERWESSPGFDVLVDDKSENLDYEDDQEYLLPLDMEQRDPNNCFLGYDFENLVEYDH-AY 292
Query: 1253 GDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSVRN 1074
D+ Y G Y++ D +N +I D V SR + D++ R+ E+ ++ +
Sbjct: 293 HDAEDDYGSGKYDNTDFADNVHIFDDVGNDSGLSRNSVTDSLLSQKRKLVAMELSINDQR 352
Query: 1073 GVDLRNQLXXXXXXXXXXXRGS-----LSHLKEAGQERPGRQHKRQTVHGRLTSEVASSR 909
VDLR++L S SHL GQ RPG Q HG+L EV S+
Sbjct: 353 IVDLRDRLGKDRAIHGHTVIRSSRRHYSSHLLGHGQGRPG---SNQRPHGKLVLEVKSTA 409
Query: 908 IGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQNA 729
I ++ + YG + G R + S S+ S AS+
Sbjct: 410 IEPHRKNGSQLYGGNDHGWLRHSRSNRSR----QRDKERRLARKQSLSSEVLRKPASKER 465
Query: 728 RSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKDK 549
+S + S T FTGPKTLA+IKEEK+K E G T N+ R A+ +FE PKPL EILKDK
Sbjct: 466 KSSQAS-TQFTGPKTLAQIKEEKKKAEENGDYTGKTDNSSRMATADFESPKPLSEILKDK 524
Query: 548 RRLGS 534
RR S
Sbjct: 525 RRPSS 529
>ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
[Glycine max]
Length = 526
Score = 315 bits (808), Expect = 2e-83
Identities = 213/546 (39%), Positives = 292/546 (53%), Gaps = 12/546 (2%)
Frame = -2
Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
MD++ KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1 MDEDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60
Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1788
PPL+G + + E P Q S P K+ VPCYF+F+ FCNKG+ CSFLHG +I + +
Sbjct: 61 PPLDGHTGAPVPSE--PTQTSLPANKTLVPCYFFFNGFCNKGDRCSFLHGPDDSIFNIKP 118
Query: 1787 SKSASLVANVHPLENKVVT-SINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYN 1611
K+ + + LENK + + GVT+ P D S + K + ++ K + Q +
Sbjct: 119 VKNENGSTDALNLENKAPSGNRTGVTST---PTDRSVAAPKNLSDLKHQPKEDHQLELPK 175
Query: 1610 NGLHKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDP 1434
N + ++ + + +S+ +P +G VP LC +S+ Q + HI+P
Sbjct: 176 NVKQQGDYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTGQSSEEQVNSHIEP 231
Query: 1433 EERWES---SPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDP 1263
EE WES SPGFDVLV D ENLGYE+D EYL R+ + L++Q +Y++ D V YD
Sbjct: 232 EEWWESSPHSPGFDVLVHDEVENLGYEEDSEYLPVVDRDEQELNDQYFRYEFIDPVEYDT 291
Query: 1262 LEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLS 1083
+ ++ ILYE Y+ Y L+ D I + V + + LD + R E+
Sbjct: 292 I-CPEADILYEQETYDGYRCLDRDLIHVNGRTVHAYATDAFLDPILSRKRIRTSAEMAAY 350
Query: 1082 VRNGVDLRNQLXXXXXXXXXXXRGSL-----SHLKEAGQERPGRQHKRQTVHGRLTSEVA 918
+N +DLR+ L G L S L QER R Q RLTS++
Sbjct: 351 DKN-LDLRDHLRRRREVNGPPVTGFLRRQESSPLMVQNQERHLRHGIEQRPSRRLTSQLG 409
Query: 917 SSRIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTAS 738
S I E + S G+ R L RQ++++ + S+ SR
Sbjct: 410 YSAIDSTGEVETLSIGNKRR-LFRQSQAQQHRPRKNYIEKLPKRQFVS--SKISRKPVFK 466
Query: 737 QNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREIL 558
Q + S TF+GPKTLAEIKEEK K N + + ++ S +F+ PKPL EIL
Sbjct: 467 QRGLIHESS--TFSGPKTLAEIKEEKMK------KNAEGSLHWKSTSTDFQDPKPLSEIL 518
Query: 557 KDKRRL 540
K KR +
Sbjct: 519 KVKRTM 524
>ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
[Glycine max]
Length = 524
Score = 315 bits (807), Expect = 3e-83
Identities = 211/544 (38%), Positives = 289/544 (53%), Gaps = 10/544 (1%)
Frame = -2
Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
MD + KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1 MDQDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60
Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1788
PPL+G + ++ E P Q S P K+ VPCYF+F+ CNKG+ CSFLHG +I + +
Sbjct: 61 PPLDGHTGASVPSE--PTQTSLPANKTMVPCYFFFNGSCNKGDRCSFLHGPDDSIFTVKP 118
Query: 1787 SKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNN 1608
K+ + + LENK TS + P D+S + K + ++ K + Q + +
Sbjct: 119 VKNDNGSTDALNLENK--TSSGNRIGLVSTPTDQSVAAPKNLSDLKLQPKEDHQLEIPKD 176
Query: 1607 GLHKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDPE 1431
+ ++ + + +S+ +P +G VP LC E +S+ Q + HI+PE
Sbjct: 177 VKQQGYYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTEQSSEEQVNSHIEPE 232
Query: 1430 ERWES---SPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPL 1260
ERWES SPGFDVLV D +NLGYE+D EY+ R+ + L +Q Y+++DSV YD +
Sbjct: 233 ERWESSPHSPGFDVLVHDEVDNLGYEEDSEYVTVGDRDEQELDDQYFGYEFKDSVEYDTI 292
Query: 1259 EFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSV 1080
++ ILYE Y+ Y L+ I + + R++ LD R E+
Sbjct: 293 -CPEADILYEQETYDGYRFLDRGLIHANGRTIHAYPRDVFLDPRLSRKRIRMSAEMAAYD 351
Query: 1079 RNGVDLRNQLXXXXXXXXXXXRGSL----SHLKEAGQERPGRQHKRQTVHGRLTSEVASS 912
+N +DLR+ L L S L QER R Q RLTS++ S
Sbjct: 352 KN-LDLRDHLRRRREIKGPPVSNFLRRESSPLMIRKQERHQRHGIEQRPIRRLTSQLGYS 410
Query: 911 RIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQN 732
I E S + HR L R ++++ K S+ SR Q
Sbjct: 411 AIDSIGEVGTLSVANKHR-LFRHSQAQQHKPRKHYREKLPKRQFLS--SKISRKPAFKQ- 466
Query: 731 ARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKD 552
R + F+GPKTLAEIKEEK K +E GS + ++ S +F+ PKPL EILKD
Sbjct: 467 -RGFIHEFSAFSGPKTLAEIKEEKMKKAE-----GSL--HWKSTSTDFQDPKPLSEILKD 518
Query: 551 KRRL 540
KR +
Sbjct: 519 KRTM 522