BLASTX nr result

ID: Coptis24_contig00017577 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017577
         (2154 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28171.3| unnamed protein product [Vitis vinifera]              407   e-111
emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera]   389   e-105
ref|XP_002524463.1| nucleic acid binding protein, putative [Rici...   378   e-102
ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containin...   315   2e-83
ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containin...   315   3e-83

>emb|CBI28171.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  407 bits (1045), Expect = e-111
 Identities = 237/540 (43%), Positives = 321/540 (59%), Gaps = 6/540 (1%)
 Frame = -2

Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
            M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1    MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60

Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINSGQSSK 1782
            PPL+G  E + EP +L   +S PV K+N PCYFY++ FCNKGE CSFLHG + ++G  + 
Sbjct: 61   PPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNGFCNKGERCSFLHGPD-STGTETG 119

Query: 1781 SASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNNGL 1602
               +    + +E   VT+I                        Q   K + Q  V+ N  
Sbjct: 120  PTLIGRRPNSVETATVTAIE----------------------TQFQPKEDLQKLVFKNAF 157

Query: 1601 HKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDPEER 1425
             +S SP+I++   ++   ++S+ LLPAEG       ++S L  + +S+ Q D  I+PEER
Sbjct: 158  EQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ----SRSLLSTDQSSEEQVDGPIEPEER 213

Query: 1424 WESSPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPLEFGDS 1245
            WESSPGFDVLVD+ SENL YED+PEYLLA + E R L+ Q L YD+ED V YD L + ++
Sbjct: 214  WESSPGFDVLVDNISENLVYEDEPEYLLALEGEGRELNGQFLGYDFEDPVEYD-LMYPEA 272

Query: 1244 GILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSVRNGVD 1065
             ILY+H +Y+S+D L+N++ +D V+ +P  SRE +LD +    R+NFP E+ ++ R+G+D
Sbjct: 273  EILYDHRIYDSFDCLDNEHSSDHVRNIPGCSRERILDPILPRKRKNFPVELAVTGRSGLD 332

Query: 1064 LRNQL-----XXXXXXXXXXXRGSLSHLKEAGQERPGRQHKRQTVHGRLTSEVASSRIGG 900
            LR++L                R   S L    +ER  R    Q + GR  SEV  + IG 
Sbjct: 333  LRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRERRRRHGMDQQLQGRSASEVRKNIIGM 392

Query: 899  CNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQNARSP 720
             +E++  S   + +G  R++    S+                  SE+SR   + +  R  
Sbjct: 393  LSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGHSQRQHIS---SEDSRKPVSRE--RIS 447

Query: 719  KESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKDKRRL 540
                TTFTGPK+LA+IKEEKRK  E     G    +  T S +F+GPKPL EILKDKR+L
Sbjct: 448  TREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMGYSSNTPSADFQGPKPLSEILKDKRKL 507


>emb|CAN63504.1| hypothetical protein VITISV_011679 [Vitis vinifera]
          Length = 554

 Score =  389 bits (1000), Expect = e-105
 Identities = 242/568 (42%), Positives = 324/568 (57%), Gaps = 32/568 (5%)
 Frame = -2

Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
            M+DEL KRNTDCVYFLASPLTCKKG +CEYRHSE ARLNPRDCWYWL+G+CLNP CAFRH
Sbjct: 1    MEDELQKRNTDCVYFLASPLTCKKGMDCEYRHSEGARLNPRDCWYWLSGSCLNPACAFRH 60

Query: 1961 P-----------------------PLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSS 1851
            P                       PL+G  E + EP +L   +S PV K+N PCYFY++ 
Sbjct: 61   PVRVMLKRIQRDSRSGLLEEKVHLPLDGHIEASSEPVTLSHHSSVPVNKTNTPCYFYYNG 120

Query: 1850 FCNKGENCSFLHG--SNINSGQSSKSASLVANVHPLENKVVTSI-NGVTAAIELPHDESQ 1680
            FCNKGE CSFLHG  S+  + +S K+AS V ++ P EN  +     G T     P+    
Sbjct: 121  FCNKGERCSFLHGPDSSAPAWKSLKTASEVNDMRPPENNXIAGTETGPTLIGRRPNSVET 180

Query: 1679 SLTKVVECIQSHSKVECQPSVYNNGLHKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPV 1503
            +    +E  Q   K + Q  V+ N   +S SP+I++   ++   ++S+ LLPAEG     
Sbjct: 181  ATVTAIE-TQFQPKEDLQKLVFKNAFEQSSSPQISMSEYEEAAAVRSDSLLPAEGFNQ-- 237

Query: 1502 PANQSPLCAEHNSDGQFDDHIDPEERWESSPGFDVLVDDGSENLGYEDDPEYLLAQKRES 1323
              ++S L  + +S+ Q D  I+PEERWESSPGFDVLVD+ SENL YED+PEYLLA + E 
Sbjct: 238  --SRSLLSTDQSSEEQVDGPIEPEERWESSPGFDVLVDNISENLVYEDEPEYLLALEGEG 295

Query: 1322 RVLHEQLLQYDYEDSVGYDPLEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREM 1143
            R L+ Q L YD+ED V YD L + ++ ILY+H +Y+S+D L+N++          R    
Sbjct: 296  RELNGQFLGYDFEDPVEYD-LMYPEAEILYDHRIYDSFDCLDNEH----------RREFW 344

Query: 1142 MLDTMGLPNRQNFPREVDLSVRNGVDLRNQL-----XXXXXXXXXXXRGSLSHLKEAGQE 978
            +L   G   R+NFP E+ ++ R+G+DLR++L                R   S L    +E
Sbjct: 345  ILFCPG--KRKNFPVELAVTGRSGLDLRDRLRKRRVTDGHTVTRFSRRHDSSCLIGRTRE 402

Query: 977  RPGRQHKRQTVHGRLTSEVASSRIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXX 798
            R  R    Q + GR  SEV  + IG  +E++  S   + +G  R++    S+        
Sbjct: 403  RRRRHGMDQQLQGRSASEVRKNIIGMLSENETLSNRGNKQGWVRRSRLPKSRQHYKEKGH 462

Query: 797  XXXXXXXXRFSENSRGGTASQNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTT 618
                      SE+SR   + +  R      TTFTGPK+LA+IKEEKRK  E     G   
Sbjct: 463  SQRQHIS---SEDSRKPVSRE--RISTREYTTFTGPKSLAQIKEEKRKAEENGEGFGKMG 517

Query: 617  NNGRTASQNFEGPKPLREILKDKRRLGS 534
             +  T S +F+GPKPL EILKDKR+LGS
Sbjct: 518  YSSNTPSADFQGPKPLSEILKDKRKLGS 545


>ref|XP_002524463.1| nucleic acid binding protein, putative [Ricinus communis]
            gi|223536251|gb|EEF37903.1| nucleic acid binding protein,
            putative [Ricinus communis]
          Length = 530

 Score =  378 bits (970), Expect = e-102
 Identities = 228/545 (41%), Positives = 307/545 (56%), Gaps = 8/545 (1%)
 Frame = -2

Query: 2144 KMDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFR 1965
            +M++++ KRNTDCVYFLASPLTCKKG ECEYRH+EIARLNPRDCWYWLAG+C NPTCAFR
Sbjct: 2    QMEEDIQKRNTDCVYFLASPLTCKKGLECEYRHNEIARLNPRDCWYWLAGDCYNPTCAFR 61

Query: 1964 HPPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHGSNINS--GQ 1791
            HPPLE  +E   E  S    +S P  K+NVPCYF+F+ FCNKG+ C F+HG   NS  G+
Sbjct: 62   HPPLEMHAEGPPELSS----SSVPANKTNVPCYFFFNGFCNKGDRCFFMHGPEANSFTGK 117

Query: 1790 SSKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYN 1611
            S  ++S +    PL++K+    + V+A  E+  + S++  K V+ ++     + Q     
Sbjct: 118  SGSTSSAIKENIPLDSKISGGNDTVSAPTEVNANPSETAAKAVKDLKLQPYEDFQFPAPE 177

Query: 1610 NGLHKSPSPRIAVPGCDD-LTLKSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDP 1434
              + +SPSP+IAV   ++ + L   FLL           ++S      + + + DDH++P
Sbjct: 178  KTVMRSPSPQIAVSQSEEAVILNPSFLLKVNSFTE----SRSLAYTTQSPEEEMDDHVEP 233

Query: 1433 EERWESSPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPLEF 1254
            EERWESSPGFDVLVDD SENL YEDD EYLL    E R  +   L YD+E+ V YD   +
Sbjct: 234  EERWESSPGFDVLVDDKSENLDYEDDQEYLLPLDMEQRDPNNCFLGYDFENLVEYDH-AY 292

Query: 1253 GDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSVRN 1074
             D+   Y  G Y++ D  +N +I D V      SR  + D++    R+    E+ ++ + 
Sbjct: 293  HDAEDDYGSGKYDNTDFADNVHIFDDVGNDSGLSRNSVTDSLLSQKRKLVAMELSINDQR 352

Query: 1073 GVDLRNQLXXXXXXXXXXXRGS-----LSHLKEAGQERPGRQHKRQTVHGRLTSEVASSR 909
             VDLR++L             S      SHL   GQ RPG     Q  HG+L  EV S+ 
Sbjct: 353  IVDLRDRLGKDRAIHGHTVIRSSRRHYSSHLLGHGQGRPG---SNQRPHGKLVLEVKSTA 409

Query: 908  IGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQNA 729
            I    ++  + YG +  G  R + S  S+                  S       AS+  
Sbjct: 410  IEPHRKNGSQLYGGNDHGWLRHSRSNRSR----QRDKERRLARKQSLSSEVLRKPASKER 465

Query: 728  RSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKDK 549
            +S + S T FTGPKTLA+IKEEK+K  E     G T N+ R A+ +FE PKPL EILKDK
Sbjct: 466  KSSQAS-TQFTGPKTLAQIKEEKKKAEENGDYTGKTDNSSRMATADFESPKPLSEILKDK 524

Query: 548  RRLGS 534
            RR  S
Sbjct: 525  RRPSS 529


>ref|XP_003550828.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
            [Glycine max]
          Length = 526

 Score =  315 bits (808), Expect = 2e-83
 Identities = 213/546 (39%), Positives = 292/546 (53%), Gaps = 12/546 (2%)
 Frame = -2

Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
            MD++  KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1    MDEDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60

Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1788
            PPL+G +   +  E  P Q S P  K+ VPCYF+F+ FCNKG+ CSFLHG   +I + + 
Sbjct: 61   PPLDGHTGAPVPSE--PTQTSLPANKTLVPCYFFFNGFCNKGDRCSFLHGPDDSIFNIKP 118

Query: 1787 SKSASLVANVHPLENKVVT-SINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYN 1611
             K+ +   +   LENK  + +  GVT+    P D S +  K +  ++   K + Q  +  
Sbjct: 119  VKNENGSTDALNLENKAPSGNRTGVTST---PTDRSVAAPKNLSDLKHQPKEDHQLELPK 175

Query: 1610 NGLHKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDP 1434
            N   +     ++     +  + +S+  +P +G    VP     LC   +S+ Q + HI+P
Sbjct: 176  NVKQQGDYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTGQSSEEQVNSHIEP 231

Query: 1433 EERWES---SPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDP 1263
            EE WES   SPGFDVLV D  ENLGYE+D EYL    R+ + L++Q  +Y++ D V YD 
Sbjct: 232  EEWWESSPHSPGFDVLVHDEVENLGYEEDSEYLPVVDRDEQELNDQYFRYEFIDPVEYDT 291

Query: 1262 LEFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLS 1083
            +   ++ ILYE   Y+ Y  L+ D I    + V   + +  LD +    R     E+   
Sbjct: 292  I-CPEADILYEQETYDGYRCLDRDLIHVNGRTVHAYATDAFLDPILSRKRIRTSAEMAAY 350

Query: 1082 VRNGVDLRNQLXXXXXXXXXXXRGSL-----SHLKEAGQERPGRQHKRQTVHGRLTSEVA 918
             +N +DLR+ L            G L     S L    QER  R    Q    RLTS++ 
Sbjct: 351  DKN-LDLRDHLRRRREVNGPPVTGFLRRQESSPLMVQNQERHLRHGIEQRPSRRLTSQLG 409

Query: 917  SSRIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTAS 738
             S I    E +  S G+  R L RQ++++  +                  S+ SR     
Sbjct: 410  YSAIDSTGEVETLSIGNKRR-LFRQSQAQQHRPRKNYIEKLPKRQFVS--SKISRKPVFK 466

Query: 737  QNARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREIL 558
            Q     + S  TF+GPKTLAEIKEEK K       N   + + ++ S +F+ PKPL EIL
Sbjct: 467  QRGLIHESS--TFSGPKTLAEIKEEKMK------KNAEGSLHWKSTSTDFQDPKPLSEIL 518

Query: 557  KDKRRL 540
            K KR +
Sbjct: 519  KVKRTM 524


>ref|XP_003525663.1| PREDICTED: zinc finger CCCH domain-containing protein 34-like
            [Glycine max]
          Length = 524

 Score =  315 bits (807), Expect = 3e-83
 Identities = 211/544 (38%), Positives = 289/544 (53%), Gaps = 10/544 (1%)
 Frame = -2

Query: 2141 MDDELTKRNTDCVYFLASPLTCKKGAECEYRHSEIARLNPRDCWYWLAGNCLNPTCAFRH 1962
            MD +  KR TDCVYFLASPLTCKKGAECEYRH+EIARLNPRDCWYWL+G CLNPTCAFRH
Sbjct: 1    MDQDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRH 60

Query: 1961 PPLEGRSETTLEPESLPAQASAPVIKSNVPCYFYFSSFCNKGENCSFLHG--SNINSGQS 1788
            PPL+G +  ++  E  P Q S P  K+ VPCYF+F+  CNKG+ CSFLHG   +I + + 
Sbjct: 61   PPLDGHTGASVPSE--PTQTSLPANKTMVPCYFFFNGSCNKGDRCSFLHGPDDSIFTVKP 118

Query: 1787 SKSASLVANVHPLENKVVTSINGVTAAIELPHDESQSLTKVVECIQSHSKVECQPSVYNN 1608
             K+ +   +   LENK  TS       +  P D+S +  K +  ++   K + Q  +  +
Sbjct: 119  VKNDNGSTDALNLENK--TSSGNRIGLVSTPTDQSVAAPKNLSDLKLQPKEDHQLEIPKD 176

Query: 1607 GLHKSPSPRIAVPGCDDLTL-KSEFLLPAEGIQSPVPANQSPLCAEHNSDGQFDDHIDPE 1431
               +     ++     +  + +S+  +P +G    VP     LC E +S+ Q + HI+PE
Sbjct: 177  VKQQGYYLELSASEYKEAAVSRSDSSIPDDGFVHNVP----HLCTEQSSEEQVNSHIEPE 232

Query: 1430 ERWES---SPGFDVLVDDGSENLGYEDDPEYLLAQKRESRVLHEQLLQYDYEDSVGYDPL 1260
            ERWES   SPGFDVLV D  +NLGYE+D EY+    R+ + L +Q   Y+++DSV YD +
Sbjct: 233  ERWESSPHSPGFDVLVHDEVDNLGYEEDSEYVTVGDRDEQELDDQYFGYEFKDSVEYDTI 292

Query: 1259 EFGDSGILYEHGMYESYDPLENDNIADQVQRVPKRSREMMLDTMGLPNRQNFPREVDLSV 1080
               ++ ILYE   Y+ Y  L+   I    + +    R++ LD      R     E+    
Sbjct: 293  -CPEADILYEQETYDGYRFLDRGLIHANGRTIHAYPRDVFLDPRLSRKRIRMSAEMAAYD 351

Query: 1079 RNGVDLRNQLXXXXXXXXXXXRGSL----SHLKEAGQERPGRQHKRQTVHGRLTSEVASS 912
            +N +DLR+ L              L    S L    QER  R    Q    RLTS++  S
Sbjct: 352  KN-LDLRDHLRRRREIKGPPVSNFLRRESSPLMIRKQERHQRHGIEQRPIRRLTSQLGYS 410

Query: 911  RIGGCNESDHRSYGSHHRGLSRQTESRYSKTXXXXXXXXXXXXXXXRFSENSRGGTASQN 732
             I    E    S  + HR L R ++++  K                  S+ SR     Q 
Sbjct: 411  AIDSIGEVGTLSVANKHR-LFRHSQAQQHKPRKHYREKLPKRQFLS--SKISRKPAFKQ- 466

Query: 731  ARSPKESITTFTGPKTLAEIKEEKRKTSEIRVSNGSTTNNGRTASQNFEGPKPLREILKD 552
             R      + F+GPKTLAEIKEEK K +E     GS   + ++ S +F+ PKPL EILKD
Sbjct: 467  -RGFIHEFSAFSGPKTLAEIKEEKMKKAE-----GSL--HWKSTSTDFQDPKPLSEILKD 518

Query: 551  KRRL 540
            KR +
Sbjct: 519  KRTM 522


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