BLASTX nr result

ID: Coptis24_contig00017546 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017546
         (622 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar...    65   6e-18
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,...    64   1e-17
ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arab...    65   4e-17
ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp....    65   1e-08

>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
           gi|9759377|dbj|BAB10028.1| unnamed protein product
           [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1|
           unknown protein [Arabidopsis thaliana]
           gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis
           thaliana] gi|110737169|dbj|BAF00534.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332004380|gb|AED91763.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score = 64.7 bits (156), Expect(2) = 6e-18
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
           + +G++P    L   L+ LV   +F+  ++ F  I+E   R   F Y K +Q  VKL ++
Sbjct: 136 RNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 195

Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
            KG+E+   M++ +  P  F YNVLI G  K K+M +A
Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233



 Score = 51.6 bits (122), Expect(2) = 6e-18
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
 Frame = +3

Query: 81  FSTSTSLTPDNRNEDVE-----------KNLKKLVQQNCYDPAKTQLNSLLFS-KTNFIS 224
           FS ST   P+++ E              +NL+ L+QQN  + A+  L+SLL S  T F S
Sbjct: 32  FSASTDPEPESQPEQAPPTNPVTGDEKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFAS 91

Query: 225 PSYLFHHFPFSSNAVKHSFSSLLFTTCV-DSKLANEAKE 338
           P  LF  F  SS ++KH FS LL +  + +SK+ +EA +
Sbjct: 92  PKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAAD 130


>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 817

 Score = 63.5 bits (153), Expect(2) = 1e-17
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
           ++DG  P    L+     LV   +F   +D F EI   G R   F Y K +Q  VKL NL
Sbjct: 133 RRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL 192

Query: 517 NKGIEVMENGK---WRPDCFTYNVLISGFVKQKKMEEA 621
             G+E +++ +    RP+ F YNVLI G  ++K++ +A
Sbjct: 193 KMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230



 Score = 51.6 bits (122), Expect(2) = 1e-17
 Identities = 32/87 (36%), Positives = 47/87 (54%)
 Frame = +3

Query: 78  NFSTSTSLTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFSKTNFISPSYLFHHFPFS 257
           N  ++ S     R E V K L+ L+QQNC + A +   SL+ +K+ F SPS LF  F   
Sbjct: 42  NTLSNNSSKDQERYEQVNK-LQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSAC 100

Query: 258 SNAVKHSFSSLLFTTCVDSKLANEAKE 338
           S  ++ + S +L + C  SK+  EA E
Sbjct: 101 SIPLRITLSDMLLSVCCKSKMLREAVE 127


>ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
           lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein
           ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata]
          Length = 1202

 Score = 64.7 bits (156), Expect(2) = 4e-17
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
           + +G+FP    L   L+ LV   +F+  ++ F  I+E   R   F Y K +Q  VKL ++
Sbjct: 509 RNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 568

Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
            KG+E+   M++ +  P  F YNVLI G  K ++M++A
Sbjct: 569 GKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDA 606



 Score = 48.9 bits (115), Expect(2) = 4e-17
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +3

Query: 99  LTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFS-KTNFISPSYLFHHFPFSSNAVKH 275
           +T D    +  +NL+ L+QQN  + A+  L SLL S    F SP  LF  F  SS ++KH
Sbjct: 422 VTGDEERHEKLRNLRVLLQQNRIETARGVLYSLLRSDSAPFTSPKELFSAFSLSSPSLKH 481

Query: 276 SFSSLLFTTCV-DSKLANEAKE 338
            FS LL +  + +SK+ +EA +
Sbjct: 482 DFSYLLLSVLLNESKMISEAAD 503


>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
           KKDG+ P  A LN FLE LV+  +++  L  F+EIVE G+R   F Y K +Q  VKLG+L
Sbjct: 139 KKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198

Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
            + IE+   M+ G   P  F YNV+I G  K+K+M++A
Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236


>ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297318352|gb|EFH48774.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 192

 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +1

Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
           + +G+FP    L   L+ LV   +F+  ++ F  I++   R   F Y K +Q  VKL ++
Sbjct: 80  RSEGIFPSSDSLTLLLDHLVKAKQFRVTINVFLNILDSDFRPSKFMYGKAIQATVKLSDV 139

Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
            KG+E+   M++ +  P  F YNVLI G  K +KM++A
Sbjct: 140 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKVRKMKDA 177


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