BLASTX nr result
ID: Coptis24_contig00017546
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00017546
(622 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar... 65 6e-18
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,... 64 1e-17
ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arab... 65 4e-17
ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi... 86 4e-15
ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp.... 65 1e-08
>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product
[Arabidopsis thaliana] gi|28973713|gb|AAO64173.1|
unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis
thaliana] gi|110737169|dbj|BAF00534.1| hypothetical
protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 64.7 bits (156), Expect(2) = 6e-18
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = +1
Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
+ +G++P L L+ LV +F+ ++ F I+E R F Y K +Q VKL ++
Sbjct: 136 RNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 195
Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
KG+E+ M++ + P F YNVLI G K K+M +A
Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233
Score = 51.6 bits (122), Expect(2) = 6e-18
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Frame = +3
Query: 81 FSTSTSLTPDNRNEDVE-----------KNLKKLVQQNCYDPAKTQLNSLLFS-KTNFIS 224
FS ST P+++ E +NL+ L+QQN + A+ L+SLL S T F S
Sbjct: 32 FSASTDPEPESQPEQAPPTNPVTGDEKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFAS 91
Query: 225 PSYLFHHFPFSSNAVKHSFSSLLFTTCV-DSKLANEAKE 338
P LF F SS ++KH FS LL + + +SK+ +EA +
Sbjct: 92 PKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAAD 130
>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 817
Score = 63.5 bits (153), Expect(2) = 1e-17
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Frame = +1
Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
++DG P L+ LV +F +D F EI G R F Y K +Q VKL NL
Sbjct: 133 RRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL 192
Query: 517 NKGIEVMENGK---WRPDCFTYNVLISGFVKQKKMEEA 621
G+E +++ + RP+ F YNVLI G ++K++ +A
Sbjct: 193 KMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230
Score = 51.6 bits (122), Expect(2) = 1e-17
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = +3
Query: 78 NFSTSTSLTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFSKTNFISPSYLFHHFPFS 257
N ++ S R E V K L+ L+QQNC + A + SL+ +K+ F SPS LF F
Sbjct: 42 NTLSNNSSKDQERYEQVNK-LQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSAC 100
Query: 258 SNAVKHSFSSLLFTTCVDSKLANEAKE 338
S ++ + S +L + C SK+ EA E
Sbjct: 101 SIPLRITLSDMLLSVCCKSKMLREAVE 127
>ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein
ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata]
Length = 1202
Score = 64.7 bits (156), Expect(2) = 4e-17
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = +1
Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
+ +G+FP L L+ LV +F+ ++ F I+E R F Y K +Q VKL ++
Sbjct: 509 RNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 568
Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
KG+E+ M++ + P F YNVLI G K ++M++A
Sbjct: 569 GKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDA 606
Score = 48.9 bits (115), Expect(2) = 4e-17
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +3
Query: 99 LTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFS-KTNFISPSYLFHHFPFSSNAVKH 275
+T D + +NL+ L+QQN + A+ L SLL S F SP LF F SS ++KH
Sbjct: 422 VTGDEERHEKLRNLRVLLQQNRIETARGVLYSLLRSDSAPFTSPKELFSAFSLSSPSLKH 481
Query: 276 SFSSLLFTTCV-DSKLANEAKE 338
FS LL + + +SK+ +EA +
Sbjct: 482 DFSYLLLSVLLNESKMISEAAD 503
>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 86.3 bits (212), Expect = 4e-15
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Frame = +1
Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
KKDG+ P A LN FLE LV+ +++ L F+EIVE G+R F Y K +Q VKLG+L
Sbjct: 139 KKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198
Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
+ IE+ M+ G P F YNV+I G K+K+M++A
Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236
>ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297318352|gb|EFH48774.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 192
Score = 65.1 bits (157), Expect = 1e-08
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = +1
Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516
+ +G+FP L L+ LV +F+ ++ F I++ R F Y K +Q VKL ++
Sbjct: 80 RSEGIFPSSDSLTLLLDHLVKAKQFRVTINVFLNILDSDFRPSKFMYGKAIQATVKLSDV 139
Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621
KG+E+ M++ + P F YNVLI G K +KM++A
Sbjct: 140 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKVRKMKDA 177