BLASTX nr result
ID: Coptis24_contig00017546
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017546 (622 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar... 65 6e-18 ref|XP_002528578.1| pentatricopeptide repeat-containing protein,... 64 1e-17 ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arab... 65 4e-17 ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi... 86 4e-15 ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp.... 65 1e-08 >ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g12100, mitochondrial; Flags: Precursor gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana] gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana] gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana] gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 816 Score = 64.7 bits (156), Expect(2) = 6e-18 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 3/98 (3%) Frame = +1 Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516 + +G++P L L+ LV +F+ ++ F I+E R F Y K +Q VKL ++ Sbjct: 136 RNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 195 Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621 KG+E+ M++ + P F YNVLI G K K+M +A Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233 Score = 51.6 bits (122), Expect(2) = 6e-18 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 13/99 (13%) Frame = +3 Query: 81 FSTSTSLTPDNRNEDVE-----------KNLKKLVQQNCYDPAKTQLNSLLFS-KTNFIS 224 FS ST P+++ E +NL+ L+QQN + A+ L+SLL S T F S Sbjct: 32 FSASTDPEPESQPEQAPPTNPVTGDEKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFAS 91 Query: 225 PSYLFHHFPFSSNAVKHSFSSLLFTTCV-DSKLANEAKE 338 P LF F SS ++KH FS LL + + +SK+ +EA + Sbjct: 92 PKELFSAFSLSSPSLKHDFSYLLLSVLLNESKMISEAAD 130 >ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 817 Score = 63.5 bits (153), Expect(2) = 1e-17 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Frame = +1 Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516 ++DG P L+ LV +F +D F EI G R F Y K +Q VKL NL Sbjct: 133 RRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNL 192 Query: 517 NKGIEVMENGK---WRPDCFTYNVLISGFVKQKKMEEA 621 G+E +++ + RP+ F YNVLI G ++K++ +A Sbjct: 193 KMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230 Score = 51.6 bits (122), Expect(2) = 1e-17 Identities = 32/87 (36%), Positives = 47/87 (54%) Frame = +3 Query: 78 NFSTSTSLTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFSKTNFISPSYLFHHFPFS 257 N ++ S R E V K L+ L+QQNC + A + SL+ +K+ F SPS LF F Sbjct: 42 NTLSNNSSKDQERYEQVNK-LQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSAC 100 Query: 258 SNAVKHSFSSLLFTTCVDSKLANEAKE 338 S ++ + S +L + C SK+ EA E Sbjct: 101 SIPLRITLSDMLLSVCCKSKMLREAVE 127 >ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata] gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp. lyrata] Length = 1202 Score = 64.7 bits (156), Expect(2) = 4e-17 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Frame = +1 Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516 + +G+FP L L+ LV +F+ ++ F I+E R F Y K +Q VKL ++ Sbjct: 509 RNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 568 Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621 KG+E+ M++ + P F YNVLI G K ++M++A Sbjct: 569 GKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDA 606 Score = 48.9 bits (115), Expect(2) = 4e-17 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Frame = +3 Query: 99 LTPDNRNEDVEKNLKKLVQQNCYDPAKTQLNSLLFS-KTNFISPSYLFHHFPFSSNAVKH 275 +T D + +NL+ L+QQN + A+ L SLL S F SP LF F SS ++KH Sbjct: 422 VTGDEERHEKLRNLRVLLQQNRIETARGVLYSLLRSDSAPFTSPKELFSAFSLSSPSLKH 481 Query: 276 SFSSLLFTTCV-DSKLANEAKE 338 FS LL + + +SK+ +EA + Sbjct: 482 DFSYLLLSVLLNESKMISEAAD 503 >ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Vitis vinifera] Length = 819 Score = 86.3 bits (212), Expect = 4e-15 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 3/98 (3%) Frame = +1 Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516 KKDG+ P A LN FLE LV+ +++ L F+EIVE G+R F Y K +Q VKLG+L Sbjct: 139 KKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198 Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621 + IE+ M+ G P F YNV+I G K+K+M++A Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236 >ref|XP_002872515.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318352|gb|EFH48774.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 192 Score = 65.1 bits (157), Expect = 1e-08 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Frame = +1 Query: 337 KKDGMFPHPAELNKFLELLVAMGKFKFALDFFNEIVECGVRVGGFSYNKVVQCEVKLGNL 516 + +G+FP L L+ LV +F+ ++ F I++ R F Y K +Q VKL ++ Sbjct: 80 RSEGIFPSSDSLTLLLDHLVKAKQFRVTINVFLNILDSDFRPSKFMYGKAIQATVKLSDV 139 Query: 517 NKGIEV---MENGKWRPDCFTYNVLISGFVKQKKMEEA 621 KG+E+ M++ + P F YNVLI G K +KM++A Sbjct: 140 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKVRKMKDA 177