BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017425
         (1120 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633416.1| PREDICTED: pentatricopeptide repeat-containi...   416   e-114
ref|XP_003540235.1| PREDICTED: pentatricopeptide repeat-containi...   394   e-107
ref|XP_003541975.1| PREDICTED: pentatricopeptide repeat-containi...   392   e-107
gb|AFK46902.1| unknown [Medicago truncatula]                          385   e-104
ref|XP_002529057.1| multidrug resistance pump, putative [Ricinus...   375   e-101

>ref|XP_003633416.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Vitis vinifera]
          Length = 551

 Score =  416 bits (1068), Expect = e-114
 Identities = 207/321 (64%), Positives = 245/321 (76%)
 Frame = +1

Query: 1    GQGWLGKGEWSVGKSRITSEGDCRSCGERLVCVDIDRAETEKFAESIAALATERESKSDF 180
            GQGW+GKG+W V ++++ S G C SC E+L  VDIDRAETE F ES+AA+A ERE +S+F
Sbjct: 236  GQGWIGKGKWLVCRAKVDSSGQCGSCREQLATVDIDRAETETFLESVAAMAMEREVRSNF 295

Query: 181  RIFQKWLDNNTKYEAIVDGANVGLYQQNFADGGFSISQLDAVVKELYARNDKKWPLVILH 360
            R FQ WLD +  YEAIVDGAN+GLYQQNFA+G FSI QLDAVVKELY R+ KK PLVILH
Sbjct: 296  REFQDWLDKHADYEAIVDGANIGLYQQNFANGEFSIPQLDAVVKELYDRSQKKRPLVILH 355

Query: 361  NKRVRSLMGNPSNRKLLEEWQTRGTLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 540
            NKR R L  N SNRKLL+EW T+G LYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI
Sbjct: 356  NKRFRKLSENASNRKLLQEWLTQGVLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 415

Query: 541  FELLGSNFFLKWKERHRVQFNFLKSNLRLVMPPSYSLVIQESEKGSWHVPVEGESSDELL 720
            FELLGS+FFLKWKERH+V++ F+K N++L+MPPSYSL IQES KG+WHVPV  ESSDE L
Sbjct: 416  FELLGSSFFLKWKERHQVRYTFVKGNVKLLMPPSYSLFIQESVKGTWHVPVASESSDESL 475

Query: 721  RTWLCITRPSHHECSDEVLISSHAHVVDKPFSSNSMLPSLCGARTDRTVNSSHSMPTLSQ 900
            RTW CITRPS HE + +  ++     +D+    +  L S    +++   N S        
Sbjct: 476  RTWHCITRPSSHELNGKASVNLETCEIDRQEQCDFKLSS---CKSEGLRNGS-------- 524

Query: 901  CPNDESMTMTGKRKDRSPCSS 963
            C N ++ TMTGKRKDRSP  S
Sbjct: 525  CEN-KTTTMTGKRKDRSPSPS 544


>ref|XP_003540235.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Glycine max]
          Length = 530

 Score =  394 bits (1011), Expect = e-107
 Identities = 195/320 (60%), Positives = 232/320 (72%)
 Frame = +1

Query: 1    GQGWLGKGEWSVGKSRITSEGDCRSCGERLVCVDIDRAETEKFAESIAALATERESKSDF 180
            GQGW+GKG+W V ++ + ++G C  CGE+LVCVDID AE EKFA S+AALA ERE K++F
Sbjct: 243  GQGWVGKGDWVVSRTSVGADGHCCCCGEQLVCVDIDDAEREKFAGSVAALAFEREVKANF 302

Query: 181  RIFQKWLDNNTKYEAIVDGANVGLYQQNFADGGFSISQLDAVVKELYARNDKKWPLVILH 360
              FQ WL+ +  YEAIVDGAN+GLYQQNFADGGFSISQLD VVKELY R+ KKWPLV+LH
Sbjct: 303  SEFQAWLEKHASYEAIVDGANIGLYQQNFADGGFSISQLDDVVKELYNRSGKKWPLVVLH 362

Query: 361  NKRVRSLMGNPSNRKLLEEWQTRGTLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 540
            NKR+R LM NPS+R+L+EEW   G LYTTPNGSNDDWYWL+AAVKL+CLLVTNDEMRDHI
Sbjct: 363  NKRLRGLMENPSSRRLVEEWMNNGALYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHI 422

Query: 541  FELLGSNFFLKWKERHRVQFNFLKSNLRLVMPPSYSLVIQESEKGSWHVPVEGESSDELL 720
            FEL+GSNFF +WKERH+V + F+K NL+L MPPSYSLVIQESEKG WHVP+   +S E  
Sbjct: 423  FELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLAPGTSCEST 482

Query: 721  RTWLCITRPSHHECSDEVLISSHAHVVDKPFSSNSMLPSLCGARTDRTVNSSHSMPTLSQ 900
            R WLCITRP                               CG     TV++  S    SQ
Sbjct: 483  RCWLCITRP-------------------------------CGHDVVATVSNGVSSLD-SQ 510

Query: 901  CPNDESMTMTGKRKDRSPCS 960
               + + ++TGKRK+RSP S
Sbjct: 511  VDENNATSVTGKRKERSPPS 530


>ref|XP_003541975.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Glycine max]
          Length = 550

 Score =  392 bits (1008), Expect = e-107
 Identities = 183/275 (66%), Positives = 219/275 (79%)
 Frame = +1

Query: 1    GQGWLGKGEWSVGKSRITSEGDCRSCGERLVCVDIDRAETEKFAESIAALATERESKSDF 180
            GQGW+GKG+W V ++ + ++G C  CG++LVCVDID  ETEKFA S+AALA ERE K++F
Sbjct: 242  GQGWVGKGDWVVSRTSVVADGHCCCCGQQLVCVDIDDVETEKFAGSVAALAFEREVKANF 301

Query: 181  RIFQKWLDNNTKYEAIVDGANVGLYQQNFADGGFSISQLDAVVKELYARNDKKWPLVILH 360
              FQ WL+ +  YEAIVDGAN+GLYQQNFADGGF+ISQLD VVKELY R+ KKWPLV+LH
Sbjct: 302  SEFQAWLEKHASYEAIVDGANIGLYQQNFADGGFNISQLDDVVKELYNRSGKKWPLVVLH 361

Query: 361  NKRVRSLMGNPSNRKLLEEWQTRGTLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 540
            NKR+R LM NPS+R+L+EEW   G LYTTPNGSNDDWYWL+AAVKL+CLLVTNDEMRDHI
Sbjct: 362  NKRLRGLMENPSSRRLVEEWMKNGVLYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHI 421

Query: 541  FELLGSNFFLKWKERHRVQFNFLKSNLRLVMPPSYSLVIQESEKGSWHVPVEGESSDELL 720
            FEL+GSNFF +WKERH+V + F+K NL+L MPPSYSLVIQESEKG WHVP+   +S E  
Sbjct: 422  FELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLVSGTSCEST 481

Query: 721  RTWLCITRPSHHECSDEVLISSHAHVVDKPFSSNS 825
            R WLCITRPS H+      +S+    +D     NS
Sbjct: 482  RCWLCITRPSGHDA--VATVSNGVSSLDSQVDENS 514


>gb|AFK46902.1| unknown [Medicago truncatula]
          Length = 392

 Score =  385 bits (989), Expect = e-104
 Identities = 193/321 (60%), Positives = 234/321 (72%), Gaps = 4/321 (1%)
 Frame = +1

Query: 1   GQGWLGKGEWSVGKSRITSEGDCRSCGERLVCVDIDRAETEKFAESIAALATERESKSDF 180
           G GW+GKG+W V +  +  +G C  CGE+LVCVDID  E EKFA S+AALA ERE K++F
Sbjct: 86  GLGWVGKGDWVVSRMSVDDDGICCGCGEQLVCVDIDDEEMEKFASSVAALAVEREVKANF 145

Query: 181 RIFQKWLDNNTKYEAIVDGANVGLYQQNFADGGFSISQLDAVVKELYARNDKKWPLVILH 360
             FQ WL+ +  YEAIVDGANVGLYQQNFADGGFS +QLD VVKELY ++ +KWPLV+LH
Sbjct: 146 SEFQGWLEKHGCYEAIVDGANVGLYQQNFADGGFSTNQLDDVVKELYNQSGRKWPLVVLH 205

Query: 361 NKRVRSLMGNPSNRKLLEEWQTRGTLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 540
           NKRV+ LM NPS+RKL+EEW   G LYTTPNGSNDDWYWLYA VKL+CLLVTNDEMRDHI
Sbjct: 206 NKRVKGLMENPSSRKLVEEWMKNGVLYTTPNGSNDDWYWLYATVKLRCLLVTNDEMRDHI 265

Query: 541 FELLGSNFFLKWKERHRVQFNFLKSNLRLVMPPSYSLVIQESEKGSWHVPVEGESSDELL 720
           FELLGSNFF +WKERH+V + F+K NL+L MPP YSLVIQESEKGSWHVP+  ++S+E  
Sbjct: 266 FELLGSNFFNQWKERHQVHYTFVKGNLKLQMPPPYSLVIQESEKGSWHVPLAVDTSNESS 325

Query: 721 RTWLCITRPSHHE---CSDEVLISSHAHV-VDKPFSSNSMLPSLCGARTDRTVNSSHSMP 888
           + WLCITR S  +    S+ V  S + H+ +D+P      + SL                
Sbjct: 326 KPWLCITRASADDATTASNGVDTSGNNHIHIDQPQKIADEVLSLD--------------- 370

Query: 889 TLSQCPNDESMTMTGKRKDRS 951
             SQ   + S ++TGKRK+RS
Sbjct: 371 --SQVIENNSTSVTGKRKERS 389


>ref|XP_002529057.1| multidrug resistance pump, putative [Ricinus communis]
            gi|223531469|gb|EEF33301.1| multidrug resistance pump,
            putative [Ricinus communis]
          Length = 561

 Score =  375 bits (963), Expect = e-101
 Identities = 189/324 (58%), Positives = 234/324 (72%), Gaps = 3/324 (0%)
 Frame = +1

Query: 1    GQGWLGKGEWSVGKSRITSEGDCRSCGERLVCVDIDRAETEKFAESIAALATERESKSDF 180
            G GW+ KG+W V +  +  +G C  CGE L CVDID  ETE+FA S+A LA ERE K++F
Sbjct: 245  GLGWIEKGKWGVKRGNMDMDGRCCCCGESLACVDIDDLETERFAGSLAGLAMEREVKANF 304

Query: 181  RIFQKWLDNNTKYEAIVDGANVGLYQQNFADGGFSISQLDAVVKELYARNDKKWPLVILH 360
              FQ WLD N  Y+AIVDGANVGLYQQNFA+GGFSISQLDAVVKELY R+ K WPL++LH
Sbjct: 305  SEFQDWLDKNADYDAIVDGANVGLYQQNFAEGGFSISQLDAVVKELYDRSGK-WPLIVLH 363

Query: 361  NKRVRSLMGNPSNRKLLEEWQTRGTLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 540
            NKRVR+++ NPS R L++EW  +  LYTTP+GSNDDWYWLYAAVKLKCLLVTNDEMRDHI
Sbjct: 364  NKRVRAILENPSQRNLIQEWTEKDILYTTPHGSNDDWYWLYAAVKLKCLLVTNDEMRDHI 423

Query: 541  FELLGSNFFLKWKERHRVQFNFLKSNLRLVMPPSYSLVIQESEKGSWHVPVEGESSDELL 720
            FELLGS+FFLKWKERH+V++ F+K  L+L MPP +S++IQESEKGSWHVP+ G+ +++  
Sbjct: 424  FELLGSSFFLKWKERHQVRYTFVKGKLKLQMPPPFSVLIQESEKGSWHVPIAGDGNEDSA 483

Query: 721  RTWLCITRPS--HHECSDEVLISS-HAHVVDKPFSSNSMLPSLCGARTDRTVNSSHSMPT 891
            ++WLCITR S  +    DE+ I +      D+   S S   S+ G   +  ++S  S P 
Sbjct: 484  QSWLCITRSSACYAPDKDEMNIETFETEYQDRILLSPSKANSITG--YNDILDSEESFPH 541

Query: 892  LSQCPNDESMTMTGKRKDRSPCSS 963
                P     T TGKRK RS   S
Sbjct: 542  SENKP----ATPTGKRKGRSTSPS 561