BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017422
         (1420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vit...   479   e-133
emb|CBI22513.3| unnamed protein product [Vitis vinifera]              461   e-127
ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Gly...   436   e-120
ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, puta...   434   e-119
ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata s...   403   e-110

>ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
          Length = 1175

 Score =  479 bits (1234), Expect = e-133
 Identities = 256/438 (58%), Positives = 303/438 (69%), Gaps = 12/438 (2%)
 Frame = -1

Query: 1279 TLGMAWXXXXXXXXXXXXXXXXXXXXXSYMTEKNRKLREQFDTSTYSFHDS------PLF 1118
            TLGMAW                     SYM EKNRKL+ QFD    S   S      P+F
Sbjct: 41   TLGMAWGSNSRSSSRSSFRNSPFSDFGSYMVEKNRKLQNQFDAGASSSSHSALSSGKPIF 100

Query: 1117 NGVSIFVDGFTVPSSQELRSYMLKYGGRFENYFSRSRVTHIICSNLPDSKIKNIRSFSRG 938
            +GVS+FVDGFT+PSSQELR YM+++GG FENYFSR RVTHIICSNLPDSKIKN+RSFS G
Sbjct: 101  HGVSVFVDGFTIPSSQELRGYMMRHGGHFENYFSRHRVTHIICSNLPDSKIKNLRSFSGG 160

Query: 937  LPVVKPTWILDSVAANKLLNWVPYQLDQLVGETRKQPKLSAFFVPKTTSMLEDGNIPANC 758
            LPVVKPTW+LDSVAANKLL+W+PYQLDQL  ETR QPKLSAFF  K+  + ED       
Sbjct: 161  LPVVKPTWVLDSVAANKLLSWIPYQLDQLANETRNQPKLSAFFALKSIPVFEDAVTHTTY 220

Query: 757  DEKLENEGPLPLGAVSQEAPSCEVGESVDCSPECNEEISTFGQEKSGEVIKEESKYVDEE 578
                E E  +  G  S++A S E G+ ++ + + + EI     E + E I E+    DE+
Sbjct: 221  PLVPETEDSVFKGGTSKDAVSSEGGQYLEYTRQSSGEIDDHQCENTNETIIEKPFSNDEK 280

Query: 577  VSESKMAEPS----SFDLNVGEALKCSPCKSSASATDCLGDQSKKICSTPRIGPGSNPCH 410
             SE KM E S      + ++   L+ SP + SAS +    D ++K  S+  +   SN  H
Sbjct: 281  SSEIKMEEQSFSNQEEECSIKNELQSSPHRPSASVSSYYLDNARKESSSTTVVGCSNKGH 340

Query: 409  STLGDPNFVENYFKNSRLHFIGTWRNRYRKRFP--SCGFKHENSTVDASNVDQGTSVIHI 236
            STL DPNFVENYFK SRLHFIGTWRNRY+KRFP  S  FKH +S ++AS V Q   +IH+
Sbjct: 341  STLEDPNFVENYFKYSRLHFIGTWRNRYQKRFPRLSNEFKHTSSDLNASGVSQKNVIIHM 400

Query: 235  DMDCFFVSVILRNRPELQDKPVAVCHSDNPRGTAEISSANYPARDYGVKAGMFVRDAKAL 56
            DMDCFFVSV++RN PELQDKPVAVCHS+NP+GTAEISSANYPARDYGVKAG+FVRDAKAL
Sbjct: 401  DMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRDAKAL 460

Query: 55   CPHLVIIPYNFEAYEVVA 2
            CPHLVI PYNFEAYE VA
Sbjct: 461  CPHLVIFPYNFEAYEEVA 478


>emb|CBI22513.3| unnamed protein product [Vitis vinifera]
          Length = 1123

 Score =  461 bits (1186), Expect = e-127
 Identities = 254/438 (57%), Positives = 295/438 (67%), Gaps = 12/438 (2%)
 Frame = -1

Query: 1279 TLGMAWXXXXXXXXXXXXXXXXXXXXXSYMTEKNRKLREQFDTSTYSFHDS------PLF 1118
            TLGMAW                     SYM EKNRKL+ QFD    S   S      P+F
Sbjct: 41   TLGMAWGSNSRSSSRSSFRNSPFSDFGSYMVEKNRKLQNQFDAGASSSSHSALSSGKPIF 100

Query: 1117 NGVSIFVDGFTVPSSQELRSYMLKYGGRFENYFSRSRVTHIICSNLPDSKIKNIRSFSRG 938
            +GVS+FVDGFT+PSSQELR YM+++GG FENYFSR RVTHIICSNLPDSKIKN+RSFS G
Sbjct: 101  HGVSVFVDGFTIPSSQELRGYMMRHGGHFENYFSRHRVTHIICSNLPDSKIKNLRSFSGG 160

Query: 937  LPVVKPTWILDSVAANKLLNWVPYQLDQLVGETRKQPKLSAFFVPKTTSMLEDGNIPANC 758
            LPVVKPTW+LDSVAANKLL+W+PYQLDQL  ETR QPKLSAFF  K+  + ED       
Sbjct: 161  LPVVKPTWVLDSVAANKLLSWIPYQLDQLANETRNQPKLSAFFALKSIPVFEDA------ 214

Query: 757  DEKLENEGPLPLGAVSQEAPSCEVGESVDCSPECNEEISTFGQEKSGEVIKEESKYVDEE 578
                      PL           V E+ D S + + EI     E + E I E+    DE+
Sbjct: 215  ----VTHTTYPL-----------VPETED-SVQSSGEIDDHQCENTNETIIEKPFSNDEK 258

Query: 577  VSESKMAEPS----SFDLNVGEALKCSPCKSSASATDCLGDQSKKICSTPRIGPGSNPCH 410
             SE KM E S      + ++   L+ SP + SAS +    D ++K  S+  +   SN  H
Sbjct: 259  SSEIKMEEQSFSNQEEECSIKNELQSSPHRPSASVSSYYLDNARKESSSTTVVGCSNKGH 318

Query: 409  STLGDPNFVENYFKNSRLHFIGTWRNRYRKRFP--SCGFKHENSTVDASNVDQGTSVIHI 236
            STL DPNFVENYFK SRLHFIGTWRNRY+KRFP  S  FKH +S ++AS V Q   +IH+
Sbjct: 319  STLEDPNFVENYFKYSRLHFIGTWRNRYQKRFPRLSNEFKHTSSDLNASGVSQKNVIIHM 378

Query: 235  DMDCFFVSVILRNRPELQDKPVAVCHSDNPRGTAEISSANYPARDYGVKAGMFVRDAKAL 56
            DMDCFFVSV++RN PELQDKPVAVCHS+NP+GTAEISSANYPARDYGVKAG+FVRDAKAL
Sbjct: 379  DMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRDAKAL 438

Query: 55   CPHLVIIPYNFEAYEVVA 2
            CPHLVI PYNFEAYE VA
Sbjct: 439  CPHLVIFPYNFEAYEEVA 456


>ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
          Length = 1115

 Score =  436 bits (1120), Expect = e-120
 Identities = 233/405 (57%), Positives = 281/405 (69%), Gaps = 7/405 (1%)
 Frame = -1

Query: 1195 YMTEKNRKLREQFDT--STYSFH-DSPLFNGVSIFVDGFTVPSSQELRSYMLKYGGRFEN 1025
            YMTEKNRKL  QF+   ST S    + LF+GVSIFVDGFT+PS+QELRSYMLKYGGRFEN
Sbjct: 61   YMTEKNRKLHNQFEAQASTSSLTLSASLFSGVSIFVDGFTIPSNQELRSYMLKYGGRFEN 120

Query: 1024 YFSRSRVTHIICSNLPDSKIKNIRSFSRGLPVVKPTWILDSVAANKLLNWVPYQLDQLVG 845
            YFSR RVTHIICSNLPDSK+KN+R+FS GLPVVKPTWILDSVAAN+LL+WVPYQLDQL  
Sbjct: 121  YFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQL-- 178

Query: 844  ETRKQPKLSAFFVPKTTSMLEDGNIPANCD--EKLENEGPLPLGAVSQEAPSCEVGESVD 671
                QPKLSAFF  K++ M ED      C     +E+       + S++  S +VG+  +
Sbjct: 179  -ANNQPKLSAFFTLKSSKMSEDAYTNDLCQVVSDIEDSSMRVGRSDSEDRHSSKVGDMSE 237

Query: 670  CSPECNEEISTFGQEKSGEVIKEESKYVDEEVSESKMAEPSSFDLNVGEALKCSPCKSSA 491
             S + + E      E +  ++ EE   V E    S  A     ++  GE        S++
Sbjct: 238  LSGQISTESDDTIPENTNAIMMEELTSVREHAGGSNAATKDERNVK-GELEPAHQAPSTS 296

Query: 490  SATDCLGDQSKKICSTPRIGPGSNPCHSTLGDPNFVENYFKNSRLHFIGTWRNRYRKRFP 311
             +T C  + + K          S  CHSTL DPNFVENYFK+SRLHFIGTWRNRYRKRFP
Sbjct: 297  FSTPCSDELNVKEYPNSSGTKPSKQCHSTLADPNFVENYFKSSRLHFIGTWRNRYRKRFP 356

Query: 310  --SCGFKHENSTVDASNVDQGTSVIHIDMDCFFVSVILRNRPELQDKPVAVCHSDNPRGT 137
              S GF +E++   AS++   + +IH+DMDCFFVSV++RN PEL  +PVAVCHS+N  GT
Sbjct: 357  TLSTGFNNESANNSASDISHNSVIIHVDMDCFFVSVVIRNHPELLGQPVAVCHSNNSNGT 416

Query: 136  AEISSANYPARDYGVKAGMFVRDAKALCPHLVIIPYNFEAYEVVA 2
            AEISSANYPAR +G++AGMFVRDAKALCPHLVI PYNFEAYE VA
Sbjct: 417  AEISSANYPARSHGIRAGMFVRDAKALCPHLVIFPYNFEAYEEVA 461


>ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
            gi|223542041|gb|EEF43585.1| terminal deoxycytidyl
            transferase rev1, putative [Ricinus communis]
          Length = 1200

 Score =  434 bits (1116), Expect = e-119
 Identities = 246/432 (56%), Positives = 282/432 (65%), Gaps = 6/432 (1%)
 Frame = -1

Query: 1279 TLGMAWXXXXXXXXXXXXXXXXXXXXXSYMTEKNRKLREQFDT--STYSFHDSPLFNGVS 1106
            TLGMAW                     SYM  KNRKL+ QF+   S  S  D  +FNGVS
Sbjct: 39   TLGMAWGSNSVSSSRSSFRSSPFSDFSSYMVVKNRKLQNQFNAAASNSSNGDGLIFNGVS 98

Query: 1105 IFVDGFTVPSSQELRSYMLKYGGRFENYFSRSRVTHIICSNLPDSKIKNIRSFSRGLPVV 926
            IFVDGFT PSSQELR YMLKYGGRFENYFSR RVTHIICSNLPDSKIKN+RSFS GLPVV
Sbjct: 99   IFVDGFTSPSSQELRGYMLKYGGRFENYFSRHRVTHIICSNLPDSKIKNLRSFSGGLPVV 158

Query: 925  KPTWILDSVAANKLLNWVPYQLDQLVGETRKQPKLSAFFVPKTTSMLEDGNIPANCDEKL 746
            +P WILDSVAANKLL+WVPYQL+QL      QPKLSAFF  K  +  ED     N +   
Sbjct: 159  RPAWILDSVAANKLLSWVPYQLEQL---ANNQPKLSAFFCMKNKAASED---DLNIEAFQ 212

Query: 745  ENEGPLPLGAVSQEAPSCEVGESVDCSPECNEEISTFGQEKSGEVIKEESKYVDEEVSES 566
                P   G  SQ+    EV + V      +      GQ    +   EE+     + SE 
Sbjct: 213  VMLDPSLKGGTSQDTNLPEVNDPVKYGKPID------GQFDYPDCEIEETSSRSSKSSEL 266

Query: 565  KMAEPSSF--DLNVGEALKCSPCKSSASATDCLGDQSKKICSTPRIGPGSNPCHSTLGDP 392
            ++ EPS+   + NV   L+ SP   S  +T            TP I   SNP HSTL DP
Sbjct: 267  RIEEPSNTEGENNVYHELQSSPRDHSIEST-----------PTPAIARPSNPRHSTLEDP 315

Query: 391  NFVENYFKNSRLHFIGTWRNRYRKRFP--SCGFKHENSTVDASNVDQGTSVIHIDMDCFF 218
            NFVENYFK+SRLHFIGTWRNRYRKRFP  S  F+  + T+DAS+    T ++H+DMDCFF
Sbjct: 316  NFVENYFKSSRLHFIGTWRNRYRKRFPRLSSDFRCRSLTIDASDNSHKTVIMHVDMDCFF 375

Query: 217  VSVILRNRPELQDKPVAVCHSDNPRGTAEISSANYPARDYGVKAGMFVRDAKALCPHLVI 38
            VSV++RN PEL DKPVAVCHSDNP+GTAEISSANYPAR YG+KAG+FVRDAKALCP L+I
Sbjct: 376  VSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARAYGIKAGIFVRDAKALCPQLII 435

Query: 37   IPYNFEAYEVVA 2
             PYNF+AYE VA
Sbjct: 436  FPYNFQAYEEVA 447


>ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
            gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1105

 Score =  403 bits (1035), Expect = e-110
 Identities = 230/422 (54%), Positives = 277/422 (65%), Gaps = 24/422 (5%)
 Frame = -1

Query: 1195 YMTEKNRKLREQFDTST------YSFHDSPLFNGVSIFVDGFTVPSSQELRSYMLKYGGR 1034
            YM  KNRKL+ QF+T         S  +  +F GVSIFVDGFT+PS QELR+YM+KYGGR
Sbjct: 57   YMEVKNRKLQNQFETEASASSRGISGSEKLIFQGVSIFVDGFTIPSHQELRAYMIKYGGR 116

Query: 1033 FENYFSRSRVTHIICSNLPDSKIKNIRSFSRGLPVVKPTWILDSVAANKLLNWVPYQLDQ 854
            FENYFSR  VTHIICSNLPDSK+KN+R+FSRGLPVVKPTWI+DS++AN+LL WVPYQLDQ
Sbjct: 117  FENYFSRRSVTHIICSNLPDSKVKNLRAFSRGLPVVKPTWIVDSISANRLLGWVPYQLDQ 176

Query: 853  LVGETRKQPKLSAFFVPKTTSMLEDGNIPANCDEKL---ENEGPLPLGAVSQEAPSCEVG 683
            L      QPKLSAFF P++       +   +C       E E    + A   E     V 
Sbjct: 177  L---NDTQPKLSAFFAPRSHLTPRMASPVTSCPPDTGYSEAEEGSSIRAEHFEEARDHVD 233

Query: 682  ESVD------CSPECNEEISTFGQEKSGEVIKE-------ESKYVDEEVSESKMAEPSSF 542
            +  D       +PE  EE  T G  KS E+  E       E K V  E+  +    P++ 
Sbjct: 234  DEFDGVYIGNTTPELTEETGT-GDLKSSEMNAERLANYDIEEKEVSSELQSTTKLHPAAD 292

Query: 541  DLNVGEALKCSPCKSSASATDCLGDQSKKICSTPRIGPGSNPCHSTLGDPNFVENYFKNS 362
            + +V  A   +  KS A+A    G  +++              HSTL DPNFVENYFKNS
Sbjct: 293  NKSV-HANGKNDGKSIATAA---GSSARR--------------HSTLEDPNFVENYFKNS 334

Query: 361  RLHFIGTWRNRYRKRF--PSCGFKHENSTVDASNVDQGTSVIHIDMDCFFVSVILRNRPE 188
            RLHFIGTWRNRYRKRF  PS G K  +S  + + +D+ +++IHID+DCFFVSV+++NR E
Sbjct: 335  RLHFIGTWRNRYRKRFHGPSNGLKWADSGQNTAEMDKKSTIIHIDLDCFFVSVVIKNRLE 394

Query: 187  LQDKPVAVCHSDNPRGTAEISSANYPARDYGVKAGMFVRDAKALCPHLVIIPYNFEAYEV 8
            L DKPVAVCHSDNP+GTAEISSANYPAR YGVKAGMFVR AK LCP LVI+PYNFEAYE 
Sbjct: 395  LHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAKELCPQLVIVPYNFEAYEE 454

Query: 7    VA 2
            VA
Sbjct: 455  VA 456