BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017392
         (697 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   162   5e-38
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   156   4e-36
ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2...   139   4e-31
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      137   2e-30
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   135   8e-30

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  162 bits (411), Expect = 5e-38
 Identities = 92/157 (58%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
 Frame = -2

Query: 492 MATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 313
           MATAAVIGLSAGK  LSS+ YYSD+T+KL S ++HGL  +Q  STK +I AKKS+++G S
Sbjct: 1   MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 312 SP-SDRHAQAIKALKEHVNTYSA-ATADESLEKLDFMLEGNFDMESSLEALLLLQKSMLE 139
            P S+R+ Q+IKALKEHV+T SA +TA    +  + M E + D++ S+EALLLLQKSMLE
Sbjct: 61  FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 138 KQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28
           KQWNLSFE+  +   P   S   + VT SGVSARQRR
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRR 157


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  156 bits (394), Expect = 4e-36
 Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
 Frame = -2

Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316
           MMATAAVIGLS+GK  LSSS YYSD+T+KL +V+DHG+  + T +TKNVI AKKS+++G 
Sbjct: 1   MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 315 SSP-SDRHAQAIKALKEHVNTYSAATADES-LEKLDFMLEGNFDMESSLEALLLLQKSML 142
           S P S+R++ +IKALKEHV+T SA++   +  +  D   E +  ++ S+EALLLLQKSML
Sbjct: 61  SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28
           EKQWNLSFE+  +     + +   + VT SGVSARQRR
Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRR 158


>ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1|
           predicted protein [Populus trichocarpa]
          Length = 499

 Score =  139 bits (351), Expect = 4e-31
 Identities = 83/162 (51%), Positives = 110/162 (67%), Gaps = 2/162 (1%)
 Frame = -2

Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316
           MMATA+ IGL+ GK  LSSS Y+SD+T+KL +V+DHG+  +Q  +TK+VI AKKS+ +G 
Sbjct: 1   MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60

Query: 315 SSPSD-RHAQAIKALKEHVNTYSA-ATADESLEKLDFMLEGNFDMESSLEALLLLQKSML 142
           S PS  R+  + KALKE ++T SA +T     + LD   E +  ++ S+EAL+LLQKSML
Sbjct: 61  SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120

Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRSMRK 16
           EKQWNLSFE   +     + S   + VT SGVSARQRR   K
Sbjct: 121 EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNK 162


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  137 bits (346), Expect = 2e-30
 Identities = 79/157 (50%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = -2

Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316
           MM+TAAVIGLSAGK  LSSS YYSD+ +KL    DH L  H   S KNVI+AKKS+ +  
Sbjct: 1   MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 315 SSPSDRHAQAIKALKEHVN-TYSAATADESLEKLDFMLEGNFDMESSLEALLLLQKSMLE 139
           S  S R +Q+ K+LKEHV+ T   +      E  + +   + D + S+E LLLLQKSMLE
Sbjct: 61  SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 138 KQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28
           KQWNLS EQ  T     E     + +T SG SAR+RR
Sbjct: 121 KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRR 157


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  135 bits (340), Expect = 8e-30
 Identities = 83/162 (51%), Positives = 106/162 (65%), Gaps = 2/162 (1%)
 Frame = -2

Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316
           MMATAA+IGL A K  L+SS YYSD T+K+   +D+ L Q Q  S+K+V+ AK S +F  
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 315 SSPS-DRHAQ-AIKALKEHVNTYSAATADESLEKLDFMLEGNFDMESSLEALLLLQKSML 142
             PS +RH+Q  IKA+KEHV T S+  A E         +   +++ ++EALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIA-EPWHNTTSWEDEETELKYTVEALLLLQKSML 119

Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRSMRK 16
           EKQW+LSFEQ  +   PKE +   V VT SGVSARQRR   K
Sbjct: 120 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSK 161