BLASTX nr result
ID: Coptis24_contig00017392
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017392 (697 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 162 5e-38 ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2... 156 4e-36 ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|2... 139 4e-31 dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 137 2e-30 ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-... 135 8e-30 >ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis] Length = 508 Score = 162 bits (411), Expect = 5e-38 Identities = 92/157 (58%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Frame = -2 Query: 492 MATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 313 MATAAVIGLSAGK LSS+ YYSD+T+KL S ++HGL +Q STK +I AKKS+++G S Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60 Query: 312 SP-SDRHAQAIKALKEHVNTYSA-ATADESLEKLDFMLEGNFDMESSLEALLLLQKSMLE 139 P S+R+ Q+IKALKEHV+T SA +TA + + M E + D++ S+EALLLLQKSMLE Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120 Query: 138 KQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28 KQWNLSFE+ + P S + VT SGVSARQRR Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRR 157 >ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa] Length = 509 Score = 156 bits (394), Expect = 4e-36 Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Frame = -2 Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316 MMATAAVIGLS+GK LSSS YYSD+T+KL +V+DHG+ + T +TKNVI AKKS+++G Sbjct: 1 MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60 Query: 315 SSP-SDRHAQAIKALKEHVNTYSAATADES-LEKLDFMLEGNFDMESSLEALLLLQKSML 142 S P S+R++ +IKALKEHV+T SA++ + + D E + ++ S+EALLLLQKSML Sbjct: 61 SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120 Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28 EKQWNLSFE+ + + + + VT SGVSARQRR Sbjct: 121 EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRR 158 >ref|XP_002319237.1| predicted protein [Populus trichocarpa] gi|222857613|gb|EEE95160.1| predicted protein [Populus trichocarpa] Length = 499 Score = 139 bits (351), Expect = 4e-31 Identities = 83/162 (51%), Positives = 110/162 (67%), Gaps = 2/162 (1%) Frame = -2 Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316 MMATA+ IGL+ GK LSSS Y+SD+T+KL +V+DHG+ +Q +TK+VI AKKS+ +G Sbjct: 1 MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60 Query: 315 SSPSD-RHAQAIKALKEHVNTYSA-ATADESLEKLDFMLEGNFDMESSLEALLLLQKSML 142 S PS R+ + KALKE ++T SA +T + LD E + ++ S+EAL+LLQKSML Sbjct: 61 SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120 Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRSMRK 16 EKQWNLSFE + + S + VT SGVSARQRR K Sbjct: 121 EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNK 162 >dbj|BAA88921.1| sigma factor [Nicotiana tabacum] Length = 508 Score = 137 bits (346), Expect = 2e-30 Identities = 79/157 (50%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Frame = -2 Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316 MM+TAAVIGLSAGK LSSS YYSD+ +KL DH L H S KNVI+AKKS+ + Sbjct: 1 MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60 Query: 315 SSPSDRHAQAIKALKEHVN-TYSAATADESLEKLDFMLEGNFDMESSLEALLLLQKSMLE 139 S S R +Q+ K+LKEHV+ T + E + + + D + S+E LLLLQKSMLE Sbjct: 61 SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120 Query: 138 KQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRR 28 KQWNLS EQ T E + +T SG SAR+RR Sbjct: 121 KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRR 157 >ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus] gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus] Length = 508 Score = 135 bits (340), Expect = 8e-30 Identities = 83/162 (51%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Frame = -2 Query: 495 MMATAAVIGLSAGKTFLSSSIYYSDVTDKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 316 MMATAA+IGL A K L+SS YYSD T+K+ +D+ L Q Q S+K+V+ AK S +F Sbjct: 1 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60 Query: 315 SSPS-DRHAQ-AIKALKEHVNTYSAATADESLEKLDFMLEGNFDMESSLEALLLLQKSML 142 PS +RH+Q IKA+KEHV T S+ A E + +++ ++EALLLLQKSML Sbjct: 61 RYPSSNRHSQQCIKAVKEHVETPSSPIA-EPWHNTTSWEDEETELKYTVEALLLLQKSML 119 Query: 141 EKQWNLSFEQRRTLKEPKEGSCNSVEVTGSGVSARQRRSMRK 16 EKQW+LSFEQ + PKE + V VT SGVSARQRR K Sbjct: 120 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSK 161