BLASTX nr result
ID: Coptis24_contig00017339
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017339 (1178 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation... 355 1e-95 ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation... 355 1e-95 ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation... 353 6e-95 ref|XP_002323353.1| predicted protein [Populus trichocarpa] gi|2... 352 8e-95 ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation... 352 1e-94 >ref|XP_003530952.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] Length = 926 Score = 355 bits (911), Expect = 1e-95 Identities = 203/408 (49%), Positives = 264/408 (64%), Gaps = 19/408 (4%) Frame = +2 Query: 11 RGYFEDPSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLAEFAKIPAQKVDILVY 181 R + ++PS+I T+D +N F +A R RKG R E++EQLT L + AK PAQK++IL Sbjct: 238 RQFMKNPSEI-TWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFS 296 Query: 182 IVWTQLKVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINC 355 +V Q V P GH+P+ VWKKC+QNML+I+DIL + I++DDS E + KG Sbjct: 297 VVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNIMVDDSVEPDENETQKGAEH 356 Query: 356 DGEVRIWRANLPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLR 535 +G +R+W NL + EF L+ + Y E LR EP L+L+Q V +YL+ R Sbjct: 357 NGTIRVW-GNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLE-R 414 Query: 536 RKDFVEAAIVARRMMEHLYYKPREAYDAMRKLVEQTEGG--------------AVQVYWW 673 +F A+ VA R +E +YYKP+E YDAMRKL E TE G + + Sbjct: 415 VGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFV 474 Query: 674 PTPSLISKHAQQRPTFPENDSALMAKLRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVS 853 TP ++++ +PTFPEN LM L + I K+G++ K AML IYHHA+ DEFS++ Sbjct: 475 VTPEVVTR----KPTFPENSRTLMDILVSMIYKYGDERTKARAMLCDIYHHALLDEFSIA 530 Query: 854 RDLLLMSHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKL 1033 RDLLLMSHLQD VQH+D ST+ILFNR M+QLGLCAFR GLI+EAH LSELY+ G +K+L Sbjct: 531 RDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKEL 590 Query: 1034 LCQGVSDCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLL 1177 L QGVS H KT +QE +E R QMPYH HINLELLEAVHL+ AMLL Sbjct: 591 LAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLL 638 >ref|XP_002281426.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Vitis vinifera] Length = 946 Score = 355 bits (911), Expect = 1e-95 Identities = 207/408 (50%), Positives = 259/408 (63%), Gaps = 21/408 (5%) Frame = +2 Query: 17 YFEDPSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLAEFAKIPAQKVDILVYIV 187 + +DPS+I T+D +N F +A R RKG R+E++EQLT L AK PAQK++IL +V Sbjct: 245 FMKDPSEI-TWDTVNKKFKEIVAVRGRKGTGRIEQVEQLTFLTRVAKTPAQKLEILFSVV 303 Query: 188 WTQLKVVPR--GHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDG 361 Q V P GH+P+ VWKKC+QNMLVI+DIL ++ I++DD E + KG + G Sbjct: 304 SAQFDVNPSLSGHMPINVWKKCVQNMLVILDILVQHSNILVDDVVEPEENETQKGADYKG 363 Query: 362 EVRIWRANLPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRK 541 +R+W NL + EF L+ + Y E LR EP+ L+L+Q V YL+ R Sbjct: 364 TIRVW-GNLVAFLERIDVEFFKSLQCIDPHTREYVERLRDEPLFLVLAQNVQDYLE-RVG 421 Query: 542 DFVEAAIVARRMMEHLYYKPREAYDAMRKLVEQTE---GGAVQVYWWP------------ 676 DF A+ VA R +E +YYKP+E YDAM+ L EQTE G + P Sbjct: 422 DFKAASKVALRRVELIYYKPQEVYDAMKNLAEQTEDTENGESEAGEEPRVEESRGPPAFV 481 Query: 677 -TPSLISKHAQQRPTFPENDSALMAKLRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVS 853 TP ++ + +PTFPEN LM L + I HG++ K AML IYHHAI DEFS + Sbjct: 482 VTPEVVPR----KPTFPENSRTLMDILVSLIYNHGDERTKARAMLCDIYHHAILDEFSTA 537 Query: 854 RDLLLMSHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKL 1033 RDLLLMSHLQD VQH+D ST+ILFNR MAQLGLCAFR GLIAE H LSELY+ G +K+L Sbjct: 538 RDLLLMSHLQDNVQHMDISTQILFNRAMAQLGLCAFRVGLIAEGHGCLSELYSGGRVKEL 597 Query: 1034 LCQGVSDCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLL 1177 L QGVS H KT +QE +E R QMPYH HINLELLE VHLICAMLL Sbjct: 598 LAQGVSQSRYHEKTPEQERIERRRQMPYHMHINLELLEGVHLICAMLL 645 >ref|XP_003525194.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] Length = 925 Score = 353 bits (905), Expect = 6e-95 Identities = 204/408 (50%), Positives = 261/408 (63%), Gaps = 19/408 (4%) Frame = +2 Query: 11 RGYFEDPSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLAEFAKIPAQKVDILVY 181 R + ++PS+I T+D +N F +A R RKG R E++EQLT L + AK PAQK++IL Sbjct: 237 RQFMKNPSEI-TWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFS 295 Query: 182 IVWTQLKVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINC 355 +V Q V P GHVP+ VWKKC+QNML+I+DIL + IV DD E + KG Sbjct: 296 VVSAQFDVNPGLNGHVPINVWKKCVQNMLIILDILVQYPNIVADDLVEPDENETQKGPEH 355 Query: 356 DGEVRIWRANLPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLR 535 +G +R+W NL + EF L+ + Y E LR EP L+L+Q V +YL+ R Sbjct: 356 NGTIRVW-GNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLE-R 413 Query: 536 RKDFVEAAIVARRMMEHLYYKPREAYDAMRKLVEQTEGG--------------AVQVYWW 673 +F A+ VA R +E +YYKP+E YDAMRKL E TE G + + Sbjct: 414 VGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFV 473 Query: 674 PTPSLISKHAQQRPTFPENDSALMAKLRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVS 853 TP ++++ +PTFPEN LM L + I K+G++ K AML IYHHA+ DEFS + Sbjct: 474 VTPEVVAR----KPTFPENSRTLMDVLVSMIYKYGDERTKARAMLCDIYHHALLDEFSTA 529 Query: 854 RDLLLMSHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKL 1033 RDLLLMSHLQD VQH+D ST+ILFNR M+QLGLCAFR GLI+EAH LSELY+ G +K+L Sbjct: 530 RDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKEL 589 Query: 1034 LCQGVSDCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLL 1177 L QGVS H KT +QE +E R QMPYH HINLELLEAVHL+ AMLL Sbjct: 590 LAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLL 637 >ref|XP_002323353.1| predicted protein [Populus trichocarpa] gi|222867983|gb|EEF05114.1| predicted protein [Populus trichocarpa] Length = 895 Score = 352 bits (904), Expect = 8e-95 Identities = 201/399 (50%), Positives = 263/399 (65%), Gaps = 12/399 (3%) Frame = +2 Query: 17 YFEDPSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLAEFAKIPAQKVDILVYIV 187 + +DPS+I T+D++N F +A R R+G R E++EQLT L + AK PAQK++IL +V Sbjct: 222 FAKDPSEI-TWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVV 280 Query: 188 WTQLKVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDG 361 Q V P GH+P+ VWK C+QNML+I+DILE+ IV+DD+ E + KG + +G Sbjct: 281 SAQFDVSPGLSGHMPINVWKNCVQNMLIILDILEQYPSIVVDDTVEPDENETQKGGDHNG 340 Query: 362 EVRIWRANLPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRK 541 +RIW NL + EF L+ + Y E L+ EP+ L+L+Q +YL+ Sbjct: 341 PIRIW-GNLVAFLERIDSEFFKSLQCIDPHTHEYVERLQDEPMFLVLAQNAQEYLE-HVG 398 Query: 542 DFVEAAIVARRMMEHLYYKPREAYDAMRKLVEQTEGGA------VQVYWWPTPSLI-SKH 700 D AA VA + +E +YYKP+E YDAMRKLVEQTE G V+ + ++ S+ Sbjct: 399 DLKAAAKVALKRVELIYYKPQEVYDAMRKLVEQTEDGGNGEEPKVEGSRGSSAFVVTSEL 458 Query: 701 AQQRPTFPENDSALMAKLRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSRDLLLMSHL 880 ++PTFPEN A+M L + I K G++ K AML IYHHA+ DE S SRDLLLMSHL Sbjct: 459 VPRKPTFPENSRAMMDALVSLIYKSGDERTKARAMLCDIYHHALLDELSTSRDLLLMSHL 518 Query: 881 QDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLLCQGVSDCS 1060 QD +QH+D S++ILFNR MAQLGLCAFR G+I EAH L ELY+ G +K+LL QGVS Sbjct: 519 QDNIQHMDISSQILFNRAMAQLGLCAFRVGMITEAHGCLFELYSGGRVKELLAQGVSQSR 578 Query: 1061 CHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLL 1177 H KTQ+QE +E R QMPYH HINLELLE+VHLICAMLL Sbjct: 579 YHEKTQEQERLERRRQMPYHMHINLELLESVHLICAMLL 617 >ref|XP_003521511.1| PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Glycine max] Length = 926 Score = 352 bits (902), Expect = 1e-94 Identities = 200/407 (49%), Positives = 264/407 (64%), Gaps = 20/407 (4%) Frame = +2 Query: 17 YFEDPSKIVTFDMINNIF---IATRVRKGIARLEEIEQLTLLAEFAKIPAQKVDILVYIV 187 + +DPS+I T+D +N F +A R RKG R E++EQLT L + AK AQK++IL +V Sbjct: 237 FMKDPSEI-TWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTAAQKLEILFSVV 295 Query: 188 WTQLKVVP--RGHVPVTVWKKCMQNMLVIVDILEENLKIVLDDSGEFGFEDISKGINCDG 361 Q V P GH+P+ VWKKC+QNMLVI+DIL ++ IV+DDS E + KG++ +G Sbjct: 296 SAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNIVVDDSVEPDENETQKGVDYNG 355 Query: 362 EVRIWRANLPDLYAWVAFEFCIGLKSARLESWAYKEMLRCEPVLLLLSQKVFKYLQLRRK 541 +R+W NL + EF L+ + Y E LR EP+ L+L+Q V +YL+ R Sbjct: 356 PIRVW-GNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLE-RVG 413 Query: 542 DFVEAAIVARRMMEHLYYKPREAYDAMRKLVEQTEGG---------------AVQVYWWP 676 +F A+ VA R +E +YYKP+E Y AM+KL E TE G + + Sbjct: 414 NFKAASKVALRRVELIYYKPQEVYVAMKKLTELTEDGDNGVEASEEKGFEESRIPTAFVA 473 Query: 677 TPSLISKHAQQRPTFPENDSALMAKLRAFIDKHGNDAAKVDAMLFAIYHHAINDEFSVSR 856 TP ++++ +PTFPEN +M L + I K+G++ K AML IYHHA+ DEFS++R Sbjct: 474 TPEVVAR----KPTFPENSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIAR 529 Query: 857 DLLLMSHLQDKVQHLDASTKILFNRTMAQLGLCAFRAGLIAEAHSYLSELYADGSIKKLL 1036 DLLLMSHLQD VQH+D ST+ILFNR M+QLGLCAFR GLI+EAH LSELY+ G +K+LL Sbjct: 530 DLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELL 589 Query: 1037 CQGVSDCSCHYKTQKQEIMEARNQMPYHTHINLELLEAVHLICAMLL 1177 QGVS H KT +QE +E R QMPYH HINLELLE VHL+ AMLL Sbjct: 590 AQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLETVHLVSAMLL 636