BLASTX nr result
ID: Coptis24_contig00017313
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017313 (709 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 255 7e-66 emb|CBI26203.3| unnamed protein product [Vitis vinifera] 248 1e-63 gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i... 237 2e-60 ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 232 5e-59 ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 231 1e-58 >ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Vitis vinifera] Length = 482 Score = 255 bits (651), Expect = 7e-66 Identities = 129/169 (76%), Positives = 146/169 (86%) Frame = +3 Query: 198 PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQRAEEVGFVEPTDVQREALPILL 377 P+Q +L S + +I ER LTLREIC+G VP+H+L+R EEVGF+ PTDVQ++ALP+LL Sbjct: 55 PAQATLNSSSITEASDIGERTLTLREICQGCVPEHVLRRIEEVGFIVPTDVQQQALPVLL 114 Query: 378 SGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKP 557 SGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKP Sbjct: 115 SGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKP 174 Query: 558 VELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704 +E ELE K+CTVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK Sbjct: 175 MEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEK 223 >emb|CBI26203.3| unnamed protein product [Vitis vinifera] Length = 486 Score = 248 bits (632), Expect = 1e-63 Identities = 128/173 (73%), Positives = 145/173 (83%), Gaps = 4/173 (2%) Frame = +3 Query: 198 PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQ----RAEEVGFVEPTDVQREAL 365 P+Q +L S + +I ER LTLREIC+G VP+H++ R EEVGF+ PTDVQ++AL Sbjct: 55 PAQATLNSSSITEASDIGERTLTLREICQGCVPEHVIALICFRIEEVGFIVPTDVQQQAL 114 Query: 366 PILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARML 545 P+LLSGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARML Sbjct: 115 PVLLSGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARML 174 Query: 546 AAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704 AAKP+E ELE K+CTVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK Sbjct: 175 AAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEK 227 >gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum] gi|11385590|gb|AAG34876.1|AF261021_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum] Length = 466 Score = 237 bits (605), Expect = 2e-60 Identities = 119/148 (80%), Positives = 130/148 (87%) Frame = +3 Query: 264 TLREICEGHVPKHILQRAEEVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLL 443 TLRE+C GHVP+H+++R EEVG+V PT+VQ +ALP L SGRDC+LHAQTGSGKTLAYLL Sbjct: 65 TLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSGKTLAYLLQ 124 Query: 444 IFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLK 623 I SVI+ QRS VQALIVVPTRELG QV KVARMLAAKP ELE K+CTVMALLDGGML Sbjct: 125 ILSVIDSQRSAVQALIVVPTRELGMQVTKVARMLAAKPSELESGPKSCTVMALLDGGMLN 184 Query: 624 RHKSWLKAEPPTIVVATMGSLFQMLEKH 707 RHKSWLKAEPPTIVVATMGSL QMLEKH Sbjct: 185 RHKSWLKAEPPTIVVATMGSLCQMLEKH 212 >ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Glycine max] Length = 472 Score = 232 bits (592), Expect = 5e-59 Identities = 125/198 (63%), Positives = 150/198 (75%), Gaps = 6/198 (3%) Frame = +3 Query: 132 LPPSKIPILKFPNTSLISTTFSPSQTSLPIS---CVPNTVEIAERALT---LREICEGHV 293 L P+ IL+ N L FS S T+L + + NT IA +T LRE+C+ HV Sbjct: 23 LAPTNCYILRSYNHFL--KHFSSSTTNLKLGTPQAILNTSPIAPSEVTTPTLRELCQSHV 80 Query: 294 PKHILQRAEEVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRS 473 P+HILQR EE+G+V PTD+QREALP L SG DCILHAQTGSGKTL YLLLI S+IN +S Sbjct: 81 PEHILQRMEEIGYVMPTDIQREALPYLFSGLDCILHAQTGSGKTLTYLLLIHSIINAAKS 140 Query: 474 TVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEP 653 +VQAL++VPTRELG QV KVAR LAAKP ++ E K+C++MALLDGG LKRHK+WLKAEP Sbjct: 141 SVQALVLVPTRELGMQVTKVARTLAAKPTGVDGEQKSCSIMALLDGGTLKRHKTWLKAEP 200 Query: 654 PTIVVATMGSLFQMLEKH 707 PTIVVAT+GSL QMLE+H Sbjct: 201 PTIVVATVGSLCQMLERH 218 >ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Cucumis sativus] gi|449531697|ref|XP_004172822.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic-like [Cucumis sativus] Length = 473 Score = 231 bits (589), Expect = 1e-58 Identities = 121/180 (67%), Positives = 141/180 (78%), Gaps = 1/180 (0%) Frame = +3 Query: 168 NTSLISTTFS-PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQRAEEVGFVEPT 344 N + ST+ S P Q L S + N E A TLREIC GHVP+HIL+R EE+GFV PT Sbjct: 39 NGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPT 98 Query: 345 DVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQV 524 DVQR+ALP+L SGRDC+LHAQTGSGKTL YLLLIFSVIN ++S VQALIVVPTRELG QV Sbjct: 99 DVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQV 158 Query: 525 AKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704 KVARMLAAKP E + VMALLDGG+L+RHK+WLKA+PP I+VAT+GSL QM+E+ Sbjct: 159 TKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVER 218