BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017313
         (709 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   255   7e-66
emb|CBI26203.3| unnamed protein product [Vitis vinifera]              248   1e-63
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   237   2e-60
ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   232   5e-59
ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   231   1e-58

>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Vitis vinifera]
          Length = 482

 Score =  255 bits (651), Expect = 7e-66
 Identities = 129/169 (76%), Positives = 146/169 (86%)
 Frame = +3

Query: 198 PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQRAEEVGFVEPTDVQREALPILL 377
           P+Q +L  S +    +I ER LTLREIC+G VP+H+L+R EEVGF+ PTDVQ++ALP+LL
Sbjct: 55  PAQATLNSSSITEASDIGERTLTLREICQGCVPEHVLRRIEEVGFIVPTDVQQQALPVLL 114

Query: 378 SGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKP 557
           SGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARMLAAKP
Sbjct: 115 SGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARMLAAKP 174

Query: 558 VELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704
           +E ELE K+CTVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK
Sbjct: 175 MEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEK 223


>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  248 bits (632), Expect = 1e-63
 Identities = 128/173 (73%), Positives = 145/173 (83%), Gaps = 4/173 (2%)
 Frame = +3

Query: 198 PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQ----RAEEVGFVEPTDVQREAL 365
           P+Q +L  S +    +I ER LTLREIC+G VP+H++     R EEVGF+ PTDVQ++AL
Sbjct: 55  PAQATLNSSSITEASDIGERTLTLREICQGCVPEHVIALICFRIEEVGFIVPTDVQQQAL 114

Query: 366 PILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQVAKVARML 545
           P+LLSGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVPTRELG QV KVARML
Sbjct: 115 PVLLSGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVPTRELGIQVTKVARML 174

Query: 546 AAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704
           AAKP+E ELE K+CTVMALLDGGMLKRHKSWLKAEPPTIVVAT+ SL QMLEK
Sbjct: 175 AAKPMEPELEQKSCTVMALLDGGMLKRHKSWLKAEPPTIVVATVRSLCQMLEK 227


>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
           gi|11385590|gb|AAG34876.1|AF261021_1 putative
           chloroplast RNA helicase VDL isoform 1 [Nicotiana
           tabacum]
          Length = 466

 Score =  237 bits (605), Expect = 2e-60
 Identities = 119/148 (80%), Positives = 130/148 (87%)
 Frame = +3

Query: 264 TLREICEGHVPKHILQRAEEVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLL 443
           TLRE+C GHVP+H+++R EEVG+V PT+VQ +ALP L SGRDC+LHAQTGSGKTLAYLL 
Sbjct: 65  TLRELCHGHVPEHVIRRVEEVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSGKTLAYLLQ 124

Query: 444 IFSVINVQRSTVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLK 623
           I SVI+ QRS VQALIVVPTRELG QV KVARMLAAKP ELE   K+CTVMALLDGGML 
Sbjct: 125 ILSVIDSQRSAVQALIVVPTRELGMQVTKVARMLAAKPSELESGPKSCTVMALLDGGMLN 184

Query: 624 RHKSWLKAEPPTIVVATMGSLFQMLEKH 707
           RHKSWLKAEPPTIVVATMGSL QMLEKH
Sbjct: 185 RHKSWLKAEPPTIVVATMGSLCQMLEKH 212


>ref|XP_003528676.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Glycine max]
          Length = 472

 Score =  232 bits (592), Expect = 5e-59
 Identities = 125/198 (63%), Positives = 150/198 (75%), Gaps = 6/198 (3%)
 Frame = +3

Query: 132 LPPSKIPILKFPNTSLISTTFSPSQTSLPIS---CVPNTVEIAERALT---LREICEGHV 293
           L P+   IL+  N  L    FS S T+L +     + NT  IA   +T   LRE+C+ HV
Sbjct: 23  LAPTNCYILRSYNHFL--KHFSSSTTNLKLGTPQAILNTSPIAPSEVTTPTLRELCQSHV 80

Query: 294 PKHILQRAEEVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRS 473
           P+HILQR EE+G+V PTD+QREALP L SG DCILHAQTGSGKTL YLLLI S+IN  +S
Sbjct: 81  PEHILQRMEEIGYVMPTDIQREALPYLFSGLDCILHAQTGSGKTLTYLLLIHSIINAAKS 140

Query: 474 TVQALIVVPTRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEP 653
           +VQAL++VPTRELG QV KVAR LAAKP  ++ E K+C++MALLDGG LKRHK+WLKAEP
Sbjct: 141 SVQALVLVPTRELGMQVTKVARTLAAKPTGVDGEQKSCSIMALLDGGTLKRHKTWLKAEP 200

Query: 654 PTIVVATMGSLFQMLEKH 707
           PTIVVAT+GSL QMLE+H
Sbjct: 201 PTIVVATVGSLCQMLERH 218


>ref|XP_004134454.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Cucumis sativus]
           gi|449531697|ref|XP_004172822.1| PREDICTED: DEAD-box
           ATP-dependent RNA helicase 58, chloroplastic-like
           [Cucumis sativus]
          Length = 473

 Score =  231 bits (589), Expect = 1e-58
 Identities = 121/180 (67%), Positives = 141/180 (78%), Gaps = 1/180 (0%)
 Frame = +3

Query: 168 NTSLISTTFS-PSQTSLPISCVPNTVEIAERALTLREICEGHVPKHILQRAEEVGFVEPT 344
           N  + ST+ S P Q  L  S + N  E    A TLREIC GHVP+HIL+R EE+GFV PT
Sbjct: 39  NGPIYSTSKSRPLQALLSSSSLKNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPT 98

Query: 345 DVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVPTRELGTQV 524
           DVQR+ALP+L SGRDC+LHAQTGSGKTL YLLLIFSVIN ++S VQALIVVPTRELG QV
Sbjct: 99  DVQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQV 158

Query: 525 AKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKSWLKAEPPTIVVATMGSLFQMLEK 704
            KVARMLAAKP   E    +  VMALLDGG+L+RHK+WLKA+PP I+VAT+GSL QM+E+
Sbjct: 159 TKVARMLAAKPAASEDGLNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVER 218