BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017249
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...   162   3e-38
emb|CBI21840.3| unnamed protein product [Vitis vinifera]              161   4e-38
ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi...   161   4e-38
emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]   161   4e-38

>ref|XP_004168984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 461

 Score =  169 bits (427), Expect = 3e-40
 Identities = 75/144 (52%), Positives = 109/144 (75%)
 Frame = -2

Query: 434 HGIEQAEKYFDTISEQIKKFPVYNALLNSYASAKSIEKAEAFMQQMKQLGLAQSTRSYNV 255
           HG+EQ E YFD +  Q+K++ V+ ALLN YA  K ++KA AFMQ++K++G A S   YN+
Sbjct: 111 HGLEQVEDYFDNMPSQLKRYQVHIALLNCYAHEKCVDKANAFMQKIKEMGFANSPLPYNI 170

Query: 254 LLSLYSNVGLYEKLDTLMEEMKENGVHPDKFTLGIRMSAYVANSDIEGMEKNFQHIEVDP 75
           +++LY  +G +E+LD+L++EMKE GV+ D+FT  IR+SAY A SD  G+EK  + +E +P
Sbjct: 171 MMNLYHQIGEFERLDSLLKEMKERGVYYDRFTYSIRISAYAAASDFRGIEKIMEQMESNP 230

Query: 74  NIIMDWDCYAIAANGYIRVGLIDK 3
           +I++DW+CY IAAN Y +VGLIDK
Sbjct: 231 SIVLDWNCYVIAANAYNKVGLIDK 254


>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score =  162 bits (410), Expect = 3e-38
 Identities = 79/143 (55%), Positives = 105/143 (73%)
 Frame = -2

Query: 431 GIEQAEKYFDTISEQIKKFPVYNALLNSYASAKSIEKAEAFMQQMKQLGLAQSTRSYNVL 252
           GIEQAEKYF+ + +++K   VYNALLN YA AKS++KAEA MQ M+ LG A  T +YNV+
Sbjct: 132 GIEQAEKYFENVPQKLKVLEVYNALLNCYAYAKSVDKAEAVMQNMRDLGFAGKTLTYNVM 191

Query: 251 LSLYSNVGLYEKLDTLMEEMKENGVHPDKFTLGIRMSAYVANSDIEGMEKNFQHIEVDPN 72
           L+L+   G ++KL+ LM EM+ENG+  D+FTLGI++SAY A  DI+ MEK    +E D N
Sbjct: 192 LNLHYQTGNFKKLEALMLEMEENGIAYDRFTLGIQLSAYAAICDIQRMEKIMSRMESDAN 251

Query: 71  IIMDWDCYAIAANGYIRVGLIDK 3
           ++ DW  YAI ANGY + GL+DK
Sbjct: 252 VVTDWCNYAIVANGYRKAGLMDK 274


>emb|CBI21840.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  161 bits (408), Expect = 4e-38
 Identities = 77/144 (53%), Positives = 103/144 (71%)
 Frame = -2

Query: 434 HGIEQAEKYFDTISEQIKKFPVYNALLNSYASAKSIEKAEAFMQQMKQLGLAQSTRSYNV 255
           HG+EQAEKYF+     ++ F VY ALLN Y+  KS+EKAEA MQ+M+ +G  + T SYNV
Sbjct: 117 HGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFVK-TLSYNV 175

Query: 254 LLSLYSNVGLYEKLDTLMEEMKENGVHPDKFTLGIRMSAYVANSDIEGMEKNFQHIEVDP 75
           +L LYS +G +EKLD LM+EM+ENG+  D FT  IR++AY A SD+EGMEK    +E DP
Sbjct: 176 MLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLETDP 235

Query: 74  NIIMDWDCYAIAANGYIRVGLIDK 3
            +  DW+ Y +AANGY++  L +K
Sbjct: 236 AVNSDWNAYIVAANGYLKADLKEK 259


>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score =  161 bits (408), Expect = 4e-38
 Identities = 77/144 (53%), Positives = 103/144 (71%)
 Frame = -2

Query: 434 HGIEQAEKYFDTISEQIKKFPVYNALLNSYASAKSIEKAEAFMQQMKQLGLAQSTRSYNV 255
           HG+EQAEKYF+     ++ F VY ALLN Y+  KS+EKAEA MQ+M+ +G  + T SYNV
Sbjct: 117 HGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFVK-TLSYNV 175

Query: 254 LLSLYSNVGLYEKLDTLMEEMKENGVHPDKFTLGIRMSAYVANSDIEGMEKNFQHIEVDP 75
           +L LYS +G +EKLD LM+EM+ENG+  D FT  IR++AY A SD+EGMEK    +E DP
Sbjct: 176 MLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLETDP 235

Query: 74  NIIMDWDCYAIAANGYIRVGLIDK 3
            +  DW+ Y +AANGY++  L +K
Sbjct: 236 AVNSDWNAYIVAANGYLKADLKEK 259


>emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
          Length = 499

 Score =  161 bits (408), Expect = 4e-38
 Identities = 77/144 (53%), Positives = 103/144 (71%)
 Frame = -2

Query: 434 HGIEQAEKYFDTISEQIKKFPVYNALLNSYASAKSIEKAEAFMQQMKQLGLAQSTRSYNV 255
           HG+EQAEKYF+     ++ F VY ALLN Y+  KS+EKAEA MQ+M+ +G  + T SYNV
Sbjct: 117 HGLEQAEKYFNETPNSLRSFQVYGALLNCYSQKKSLEKAEAIMQEMRDMGFVK-TLSYNV 175

Query: 254 LLSLYSNVGLYEKLDTLMEEMKENGVHPDKFTLGIRMSAYVANSDIEGMEKNFQHIEVDP 75
           +L LYS +G +EKLD LM+EM+ENG+  D FT  IR++AY A SD+EGMEK    +E DP
Sbjct: 176 MLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCIRLNAYCATSDMEGMEKLLMKLETDP 235

Query: 74  NIIMDWDCYAIAANGYIRVGLIDK 3
            +  DW+ Y +AANGY++  L +K
Sbjct: 236 AVNSDWNAYIVAANGYLKADLKEK 259