BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017220
         (2164 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi...   588   e-165
emb|CBI33534.3| unnamed protein product [Vitis vinifera]              586   e-165
ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|2...   586   e-165
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,...   563   e-158
ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containi...   546   e-153

>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  588 bits (1516), Expect = e-165
 Identities = 288/483 (59%), Positives = 367/483 (75%)
 Frame = -1

Query: 2095 RTKKRPTSQPDPSPNKKPHEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLED 1916
            R K+  +S  D + + +    KRP+FP+YL+TPNL PK++L+CEI+ANTP+  VE  L D
Sbjct: 23   RNKRHSSSTTDSATHHQT--PKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHD 80

Query: 1915 TGIRVTTDDVEQVLKLSYAHPGPAVKFFRWSGKQLNDNHSPYGWNLVVDLLGNNSLFEAM 1736
            T IRV+ +DVE  LKLSY  PG AVKFFRWSG QLNDNHSPY WNLVVD+LG N LF+AM
Sbjct: 81   TAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAM 140

Query: 1735 WDAIKSMKKEGLLSLATFASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAI 1556
            WDA+KSMKK+GLLSLATFAS+FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAI
Sbjct: 141  WDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAI 200

Query: 1555 CRQGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVN 1376
            CR G+TV+A EFL   +  IRPD DTYAILLEGWESEG+ G A +TF+EMV+  GWDP N
Sbjct: 201  CRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGN 260

Query: 1375 VPGYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNV 1196
            V  YD+FLN LL    DG RE MKFF++M+  +C PGM+F+R  L E +KTS+ + A  +
Sbjct: 261  VSAYDSFLNALLHG-PDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLL 319

Query: 1195 WETMVRLNGCKPDTEMYNGMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFML 1016
            W+TM+  N C+PDTEMYN M++L C  +   +A  +LDEMV  GAFPDS+TY+ L +F++
Sbjct: 320  WQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLI 379

Query: 1015 KLRKVREVSVVFNEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWE 836
            + RK+ E   +F+EMV+NE +P   NC+AA+ +Y+D+GD   AIK+WK ++EN    G E
Sbjct: 380  RRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLE 438

Query: 835  IAGNKLIVGLRDLNRLPEARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRK 656
              GN L+ GLRD +R+PEA KYA+DMI RGIKL S TLSKLK +L ++GK   YDELLRK
Sbjct: 439  ETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRK 498

Query: 655  WKS 647
            WK+
Sbjct: 499  WKT 501


>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  586 bits (1511), Expect = e-165
 Identities = 284/462 (61%), Positives = 358/462 (77%)
 Frame = -1

Query: 2032 KRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYAHP 1853
            KRP+FP+YL+TPNL PK++L+CEI+ANTP+  VE  L DT IRV+ +DVE  LKLSY  P
Sbjct: 46   KRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFP 105

Query: 1852 GPAVKFFRWSGKQLNDNHSPYGWNLVVDLLGNNSLFEAMWDAIKSMKKEGLLSLATFASV 1673
            G AVKFFRWSG QLNDNHSPY WNLVVD+LG N LF+AMWDA+KSMKK+GLLSLATFAS+
Sbjct: 106  GSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASI 165

Query: 1672 FSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKEKIR 1493
            FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAICR G+TV+A EFL   +  IR
Sbjct: 166  FSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIR 225

Query: 1492 PDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDGVRE 1313
            PD DTYAILLEGWESEG+ G A +TF+EMV+  GWDP NV  YD+FLN LL    DG RE
Sbjct: 226  PDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHG-PDGRRE 284

Query: 1312 TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYNGMM 1133
             MKFF++M+  +C PGM+F+R  L E +KTS+ + A  +W+TM+  N C+PDTEMYN M+
Sbjct: 285  AMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMI 344

Query: 1132 SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKNEFI 953
            +L C  +   +A  +LDEMV  GAFPDS+TY+ L +F+++ RK+ E   +F+EMV+NE +
Sbjct: 345  ALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECV 404

Query: 952  PTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPEARK 773
            P   NC+AA+ +Y+D+GD   AIK+WK ++EN    G E  GN L+ GLRD +R+PEA K
Sbjct: 405  PDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLEETGNLLVTGLRDHDRIPEAVK 463

Query: 772  YAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKS 647
            YA+DMI RGIKL S TLSKLK +L ++GK   YDELLRKWK+
Sbjct: 464  YAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKT 505


>ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|222843423|gb|EEE80970.1|
            predicted protein [Populus trichocarpa]
          Length = 499

 Score =  586 bits (1511), Expect = e-165
 Identities = 287/463 (61%), Positives = 357/463 (77%)
 Frame = -1

Query: 2032 KRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYAHP 1853
            K+P+F SYL+TPNLPP IKL+CEI+ANTP+ NVE+ L+ T IRV   DVEQVLKLSY+ P
Sbjct: 35   KKPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSP 94

Query: 1852 GPAVKFFRWSGKQLNDNHSPYGWNLVVDLLGNNSLFEAMWDAIKSMKKEGLLSLATFASV 1673
            G AVKFFRW+G QLND HSPY WNLVVDLLG NS+F+AMW AIKSMK+E L+SLATFASV
Sbjct: 95   GSAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASV 154

Query: 1672 FSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKEKIR 1493
            FSSYV+ + V+EA+MTFEVMDQYGC R+VVALNSLLSAICR+G+T  A EFLH+AK +I 
Sbjct: 155  FSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRIL 214

Query: 1492 PDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDGVRE 1313
            PD D+YAILLEGWE E +V +A  TF +MV   GWDP NVP YD FL+TLL   +DG+RE
Sbjct: 215  PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMG-YDGLRE 273

Query: 1312 TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYNGMM 1133
             MK FD MK   CFPG+KFFR AL E LK +++R A  +WET+V   G +PD ++YN M+
Sbjct: 274  AMKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMI 333

Query: 1132 SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKNEFI 953
             + CY NQ D+A + LDEM++ G FPDS+TY+ L ++++K +K++E S V NEM+KNEF 
Sbjct: 334  GIHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFF 393

Query: 952  PTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPEARK 773
            P   NC+AA+  Y+D  +P MAIK+WKCM+EN      E AGN L+V LR  + +PEA K
Sbjct: 394  PNKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVK 453

Query: 772  YAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKSN 644
            YAE MIE+GIKL S +LSKLKQ L +  K   Y+ELLRKWK++
Sbjct: 454  YAEVMIEKGIKLTSSSLSKLKQMLNEEKKPILYEELLRKWKAH 496


>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 510

 Score =  563 bits (1451), Expect = e-158
 Identities = 277/465 (59%), Positives = 347/465 (74%)
 Frame = -1

Query: 2041 HEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSY 1862
            +  K PTFPSYL+TPNL PKIKL+CEI+A  P+  VET L++TG+ V+  DVEQV+KLSY
Sbjct: 47   YPNKHPTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSY 106

Query: 1861 AHPGPAVKFFRWSGKQLNDNHSPYGWNLVVDLLGNNSLFEAMWDAIKSMKKEGLLSLATF 1682
            + PGPAVKFFRW+G +L DNHSPY WNLVVDLLG N LF+AMWDAIKSMK + L+SLATF
Sbjct: 107  SFPGPAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATF 166

Query: 1681 ASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKE 1502
            ASVF SYV    V++A+ TFEVM+QYG  RDVVALNSLLSAICR GKTV A +FL +AK 
Sbjct: 167  ASVFGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKN 226

Query: 1501 KIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDG 1322
             I+PD DT+AILLEGWE E ++ N+ +TF+EMV + GWDP N P YD FL TLL     G
Sbjct: 227  SIKPDADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMG-RIG 285

Query: 1321 VRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYN 1142
              E ++F ++MK  RC PGM+FFR+A+ E LK +++R A  +WE M+  NG +PD EMYN
Sbjct: 286  FNEVIEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYN 345

Query: 1141 GMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKN 962
             M+SL CY N  D+A R LDEMV+ G FPD +TY+ L +F++K RK++E SV+FNEM+KN
Sbjct: 346  LMISLYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKN 405

Query: 961  EFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPE 782
            E +P   NCSAA+ +++   DP MAIK+WKCM+EN  +   E  GN LIV L DL+  PE
Sbjct: 406  ECLPNQANCSAAVRVFMHSKDPYMAIKVWKCMIENYEL-DLEETGNLLIVELCDLHMDPE 464

Query: 781  ARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKS 647
            A KYAE MI +GIK+ S T+ KLK  L Q  K + Y+ LLRKWK+
Sbjct: 465  AVKYAESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWKA 509


>ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 485

 Score =  546 bits (1407), Expect = e-153
 Identities = 277/485 (57%), Positives = 349/485 (71%), Gaps = 1/485 (0%)
 Frame = -1

Query: 2095 RTKKRPTSQPDPSP-NKKPHEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLE 1919
            R K+   S   PSP +KKP      TFPS+   PNLP  IK +C ++A T   +VE +L+
Sbjct: 8    RRKRAHPSSSSPSPISKKPQ-----TFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQ 62

Query: 1918 DTGIRVTTDDVEQVLKLSYAHPGPAVKFFRWSGKQLNDNHSPYGWNLVVDLLGNNSLFEA 1739
               I VT  DVE+VLKLSY  PG AVKFFRWSG+ LNDNH+PY WNLVVD+LG N  F+A
Sbjct: 63   SAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDA 122

Query: 1738 MWDAIKSMKKEGLLSLATFASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSA 1559
            MWDAIKSM KEGLLSLATFASVFSSYV  + + EA+M FE+MD Y   RDVVALNSLLSA
Sbjct: 123  MWDAIKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSA 182

Query: 1558 ICRQGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPV 1379
            IC  G+T+ A ++L +AK+ +RPD DTYAIL+EGWE E  V  A +TF EMVI+ GWDP+
Sbjct: 183  ICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPL 242

Query: 1378 NVPGYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASN 1199
            NVP YD+FL TL++   DG+ E +KF D M+  RCFPG++F ++AL+E +K+ ++R A  
Sbjct: 243  NVPAYDSFLCTLVRG-PDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEF 301

Query: 1198 VWETMVRLNGCKPDTEMYNGMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFM 1019
             WE +V     +P  EMYN M+ L CY    D A R+LDEMV+ GAFPD +TY+ L KF+
Sbjct: 302  FWEVLVVGKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFL 361

Query: 1018 LKLRKVREVSVVFNEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGW 839
            +K RK+RE SVVF EMVKNE +P  +NC AA+  YVD G+P MAIK+WK ++EN      
Sbjct: 362  IKGRKLREASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVEN-YKKDL 420

Query: 838  EIAGNKLIVGLRDLNRLPEARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLR 659
            E   N L+VGLRDLNRLPEA KYAEDMI+R I+L S T+SKL+QSL +  + + Y++LLR
Sbjct: 421  ERTANFLVVGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLR 480

Query: 658  KWKSN 644
            K KS+
Sbjct: 481  KSKSH 485