BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017202
         (597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   152   3e-35
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              148   6e-34
ref|XP_002884496.1| pentatricopeptide repeat-containing protein ...    75   9e-12
ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis th...    75   9e-12
gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thal...    75   9e-12

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  152 bits (385), Expect = 3e-35
 Identities = 76/116 (65%), Positives = 94/116 (81%), Gaps = 6/116 (5%)
 Frame = +3

Query: 228 IEQKIMSLLQESTKFDHLIQIHAYV------RNNFILAKLLRQIFSCSSLKNLQYARSIF 389
           I +K+MSLLQ +TK + +IQIHA +       NNF+LAKLLR++F+CSS  +L YARS+F
Sbjct: 2   IGKKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVF 61

Query: 390 DENQSPDTFIWNTMIRAYLNVPNPQESLSLFFQMRFRDGIVVDSFSLSLVLQACGR 557
           DE  SPDTFIWNTMIRAYLN  NPQES+SLFFQMR ++ I +DS+SLSLV+QACGR
Sbjct: 62  DEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGR 117


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  148 bits (374), Expect = 6e-34
 Identities = 74/111 (66%), Positives = 90/111 (81%), Gaps = 6/111 (5%)
 Frame = +3

Query: 243 MSLLQESTKFDHLIQIHAYV------RNNFILAKLLRQIFSCSSLKNLQYARSIFDENQS 404
           MSLLQ +TK + +IQIHA +       NNF+LAKLLR++F+CSS  +L YARS+FDE  S
Sbjct: 1   MSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPS 60

Query: 405 PDTFIWNTMIRAYLNVPNPQESLSLFFQMRFRDGIVVDSFSLSLVLQACGR 557
           PDTFIWNTMIRAYLN  NPQES+SLFFQMR ++ I +DS+SLSLV+QACGR
Sbjct: 61  PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGR 111


>ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330336|gb|EFH60755.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
 Frame = +3

Query: 240 IMSLLQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQ 401
           I+S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+   
Sbjct: 8   ILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 67

Query: 402 SPDTFIWNTMIRAYLNVPNPQESLSLFFQMRFRDGIVVDSFSLSLVLQAC 551
            P  +IWN+MIR Y N PNP ++L +F+Q   R G   D F+   VL+AC
Sbjct: 68  CPSVYIWNSMIRGYSNSPNPDKAL-IFYQEMLRKGYSPDYFTFPYVLKAC 116


>ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
           gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g05240 gi|332640689|gb|AEE74210.1|
           mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
 Frame = +3

Query: 240 IMSLLQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQ 401
           I+S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+   
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 402 SPDTFIWNTMIRAYLNVPNPQESLSLFFQMRFRDGIVVDSFSLSLVLQAC 551
            P  +IWN+MIR Y N PNP ++L +F+Q   R G   D F+   VL+AC
Sbjct: 69  CPSVYIWNSMIRGYSNSPNPDKAL-IFYQEMLRKGYSPDYFTFPYVLKAC 117


>gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
 Frame = +3

Query: 240 IMSLLQESTKFDHLIQIH------AYVRNNFILAKLLRQIFSCSSLKNLQYARSIFDENQ 401
           I+S L+       L Q+H      + +RN   L++L+    +C    NL YARS+F+   
Sbjct: 9   ILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESID 68

Query: 402 SPDTFIWNTMIRAYLNVPNPQESLSLFFQMRFRDGIVVDSFSLSLVLQAC 551
            P  +IWN+MIR Y N PNP ++L +F+Q   R G   D F+   VL+AC
Sbjct: 69  CPSVYIWNSMIRGYSNSPNPDKAL-IFYQEMLRKGYSPDYFTFPYVLKAC 117