BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017200
         (729 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   237   2e-60
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   230   2e-58
ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   230   2e-58
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              227   2e-57
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   227   2e-57

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  237 bits (604), Expect = 2e-60
 Identities = 112/182 (61%), Positives = 137/182 (75%)
 Frame = -2

Query: 728  GDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVTGHIWSLLKYNS 549
            GD+PYDKDLE+ GS+ +I DAW++KCSYDGQL  L+ QYKV  E+EVVTGHIWS+ K NS
Sbjct: 1025 GDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNS 1084

Query: 548  RKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVYEQKASAWYQVTYDPKW 369
            RKQG+LKERLK +YHSLK EF+  FE +  D  QLT D KN +YEQKASAWYQV Y PKW
Sbjct: 1085 RKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKW 1144

Query: 368  AMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQKPINTLAHYLAK 189
              K++ ++EP+A      A +LSFAWI A+YL RIKIRC G   +D  KP+N+L  YLA 
Sbjct: 1145 VNKSMELQEPDAAGC---ASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLAD 1201

Query: 188  KI 183
            +I
Sbjct: 1202 RI 1203


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  230 bits (587), Expect = 2e-58
 Identities = 107/182 (58%), Positives = 138/182 (75%)
 Frame = -2

Query: 728  GDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVTGHIWSLLKYNS 549
            GD+ YD DLE+ G+  FI +AW++KCSYDGQL+ L+GQYKVN E+E+VTGHIWS+ KY S
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 548  RKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVYEQKASAWYQVTYDPKW 369
            RKQG+LKE+LKH+Y +LK +F+  FENLG +  QLT D +N +YE+KASAWYQV Y P W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 368  AMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQKPINTLAHYLAK 189
              K+L +REP+A E      +LSF WI A+YL RIKI+C  TK  D  KPIN+LA YL+ 
Sbjct: 1139 LKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSD 1195

Query: 188  KI 183
            ++
Sbjct: 1196 RM 1197


>ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  230 bits (587), Expect = 2e-58
 Identities = 107/182 (58%), Positives = 138/182 (75%)
 Frame = -2

Query: 728  GDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVTGHIWSLLKYNS 549
            GD+ YD DLE+ G+  FI +AW++KCSYDGQL+ L+GQYKVN E+E+VTGHIWS+ KY S
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 548  RKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVYEQKASAWYQVTYDPKW 369
            RKQG+LKE+LKH+Y +LK +F+  FENLG +  QLT D +N +YE+KASAWYQV Y P W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 368  AMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQKPINTLAHYLAK 189
              K+L +REP+A E      +LSF WI A+YL RIKI+C  TK  D  KPIN+LA YL+ 
Sbjct: 1139 LKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRTKSFDPTKPINSLASYLSD 1195

Query: 188  KI 183
            ++
Sbjct: 1196 RM 1197


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  227 bits (578), Expect = 2e-57
 Identities = 110/180 (61%), Positives = 133/180 (73%)
 Frame = -2

Query: 722  LPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVTGHIWSLLKYNSRK 543
            +P+D+DL +PGSA FI DAW  KCSYDGQLN L+GQYKV  E+EVVTGH+WS+ KY SRK
Sbjct: 858  VPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRK 917

Query: 542  QGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVYEQKASAWYQVTYDPKWAM 363
            QG+L ERLKHAY SLK EF+  FE +  D  QLT D KN +YEQKASAWYQVTY P W  
Sbjct: 918  QGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVK 977

Query: 362  KALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQKPINTLAHYLAKKI 183
            K+L ++ P  +E      +LSFAWI A+YL RIKIR  GT  +D+ KPIN+LA +L  +I
Sbjct: 978  KSLELQNP--DEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1035


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  227 bits (578), Expect = 2e-57
 Identities = 110/180 (61%), Positives = 133/180 (73%)
 Frame = -2

Query: 722  LPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGEDEVVTGHIWSLLKYNSRK 543
            +P+D+DL +PGSA FI DAW  KCSYDGQLN L+GQYKV  E+EVVTGH+WS+ KY SRK
Sbjct: 1020 VPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRK 1079

Query: 542  QGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVYEQKASAWYQVTYDPKWAM 363
            QG+L ERLKHAY SLK EF+  FE +  D  QLT D KN +YEQKASAWYQVTY P W  
Sbjct: 1080 QGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVK 1139

Query: 362  KALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKELDNQKPINTLAHYLAKKI 183
            K+L ++ P  +E      +LSFAWI A+YL RIKIR  GT  +D+ KPIN+LA +L  +I
Sbjct: 1140 KSLELQNP--DEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197