BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017197
         (816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab...    87   3e-15
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    87   3e-15
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    87   6e-15
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    85   2e-14
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...    85   2e-14

>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
           lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
           ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
          Length = 352

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 15/211 (7%)
 Frame = +1

Query: 211 KIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCNML 390
           KIWN++   ++K FLW+  + ++   ENLR R +  +  C RC N++E+N H LF C  +
Sbjct: 23  KIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSI 82

Query: 391 RHIWYASKLSIRTDLWNQTDSIGSIISTICSNLHD-KTILRSTMSIFATTMFSIWISRND 567
           R IW A+ +  + DLW++       I  +  +LHD K I +    +    ++ IW +RND
Sbjct: 83  RPIWRAAGIPTQ-DLWDRDKPFEGKIRFLL-DLHDNKHIDKVCRYLPFWLLWRIWKTRND 140

Query: 568 LVFSQKQTNVSNII------------CRAETFITNNEKPFS--KNNHLHMWPQINNNWHY 705
           L+F+ K T   +I+            C+  T    ++      +++    W +    +  
Sbjct: 141 LIFNHKVTKGEDIVGQALIDTKEWLDCQDRTHGPQHDGKLQGVRSSRSSKWCKPERGYVK 200

Query: 706 LTTDASWDYNTKQVGIGFALWNNFGYCIGAG 798
              DAS     +  G+G  + ++ G C+  G
Sbjct: 201 CNFDASHYEGNQSSGLGRIIRDSNGTCLDCG 231


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
 Frame = +1

Query: 202 LWKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHC 381
           +++KIW   T+ +++ FLWK ++NSLP    L  R ++  + C RC +  E+ +H LF C
Sbjct: 253 IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKC 312

Query: 382 NMLRHIWYASKLSIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561
              R  W  S + I        DSI   +  + +  +          +    ++ +W +R
Sbjct: 313 TFARLTWAISSIPIPLG-GEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNR 371

Query: 562 NDLVFSQKQTNVSNIICRAETFITN----------NEKPFSKNNHLHMWPQINNNWHYLT 711
           N+LVF  ++ N   ++ RAE  +              KP    +    W    + W    
Sbjct: 372 NELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCN 431

Query: 712 TDASWDYNTKQVGIGFALWNNFG 780
           TDA+W+ + ++ GIG+ L N  G
Sbjct: 432 TDATWNRDNERCGIGWVLRNEKG 454


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 19/217 (8%)
 Frame = +1

Query: 211 KIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCNML 390
           KIW + TA ++K FLWK ++ +L T +NL+ R I N   C RC  + E++ H  F C   
Sbjct: 17  KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 391 RHIWYASKL---SIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561
           + +W AS +    +RT        +  ++S+  +N   +       ++    ++ +W SR
Sbjct: 77  QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ-----LFNLAIWILWRLWKSR 131

Query: 562 NDLVFSQKQTNVSNIICRAETFI----TNNEKPFSKNNHLH------------MWPQINN 693
           N LVF QK  +  N + RA   +      N    S N  +H             W +  +
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPS 191

Query: 694 NWHYLTTDASWDYNTKQVGIGFALWNNFGYCIGAGHS 804
            W     D ++++ T+    G+ + +  G  +G+G +
Sbjct: 192 TWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQA 228


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 1/204 (0%)
 Frame = +1

Query: 205  WKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCN 384
            W  +WN+    +VK FLW++  N+LPTR  L++R +  + TC  C N+ E + H  F+C 
Sbjct: 1417 WVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCT 1476

Query: 385  MLRHIWYASKLSIRTDLWNQTD-SIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561
              R  W    L  +     Q + S G  +  I   L       S   I+A  M+SIW  R
Sbjct: 1477 KSRQCWQQLGLWSKVQQKAQLNLSFGVTMFEILQELDS-----SQRVIWACVMWSIWKQR 1531

Query: 562  NDLVFSQKQTNVSNIICRAETFITNNEKPFSKNNHLHMWPQINNNWHYLTTDASWDYNTK 741
            ND ++  +    + +  R    +T  +      N   +W + +        DA++   + 
Sbjct: 1532 NDCIWRNEVMTTAAVRDRGLNLLTGWQ------NAQDIWRKPDEGHFKCNVDAAFFKESN 1585

Query: 742  QVGIGFALWNNFGYCIGAGHSRDT 813
            +VGIG  + ++ G  + A  S  T
Sbjct: 1586 RVGIGICIRDDSGRLVKARTSWST 1609


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223538337|gb|EEF39944.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 483

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
 Frame = +1

Query: 193 NQQLWKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHAL 372
           N  +W+++W ++ A + K+F+W+A+TN LP R NL  R +T  ++CP C +Q E+  H L
Sbjct: 180 NVVVWRRLWKLNIAAKCKVFMWRALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHIL 239

Query: 373 FHCNMLRHIW-YASKLSIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSI 549
             C++    W Y +     + + N  +   S+         D +I+ S    F    +S+
Sbjct: 240 VLCDVTTQSWKYVNLYQFLSQVSNLLEGARSVFEHF-----DDSIVAS----FVVLWWSL 290

Query: 550 WISRNDLVFSQKQTNVSNIICRAETFITNNEKPFSKNNHLH----------MWPQINNNW 699
           W + ND+V++ K+ +   +  RA +F+    K     ++            +W +     
Sbjct: 291 WTNMNDVVWNGKKLSWRAVASRASSFLFQWGKARKLTDYHQLGRHFAGGDCLWQKPATGK 350

Query: 700 HYLTTDASWDYNTKQVGIGFALWNNFGYCI 789
           + L  DAS      + G  F L +N G  I
Sbjct: 351 YKLNVDASSSAERGKSGASFVLRDNAGIWI 380