BLASTX nr result
ID: Coptis24_contig00017197
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017197 (816 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab... 87 3e-15 ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia... 87 3e-15 ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia... 87 6e-15 ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub... 85 2e-14 ref|XP_002522452.1| nucleic acid binding protein, putative [Rici... 85 2e-14 >ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata] Length = 352 Score = 87.4 bits (215), Expect = 3e-15 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 15/211 (7%) Frame = +1 Query: 211 KIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCNML 390 KIWN++ ++K FLW+ + ++ ENLR R + + C RC N++E+N H LF C + Sbjct: 23 KIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSI 82 Query: 391 RHIWYASKLSIRTDLWNQTDSIGSIISTICSNLHD-KTILRSTMSIFATTMFSIWISRND 567 R IW A+ + + DLW++ I + +LHD K I + + ++ IW +RND Sbjct: 83 RPIWRAAGIPTQ-DLWDRDKPFEGKIRFLL-DLHDNKHIDKVCRYLPFWLLWRIWKTRND 140 Query: 568 LVFSQKQTNVSNII------------CRAETFITNNEKPFS--KNNHLHMWPQINNNWHY 705 L+F+ K T +I+ C+ T ++ +++ W + + Sbjct: 141 LIFNHKVTKGEDIVGQALIDTKEWLDCQDRTHGPQHDGKLQGVRSSRSSKWCKPERGYVK 200 Query: 706 LTTDASWDYNTKQVGIGFALWNNFGYCIGAG 798 DAS + G+G + ++ G C+ G Sbjct: 201 CNFDASHYEGNQSSGLGRIIRDSNGTCLDCG 231 >ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis thaliana] gi|7269807|emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1| putative reverse transcriptase/RNA-dependent DNA polymerase [Arabidopsis thaliana] gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein [Arabidopsis thaliana] Length = 575 Score = 87.4 bits (215), Expect = 3e-15 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 10/203 (4%) Frame = +1 Query: 202 LWKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHC 381 +++KIW T+ +++ FLWK ++NSLP L R ++ + C RC + E+ +H LF C Sbjct: 253 IYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKC 312 Query: 382 NMLRHIWYASKLSIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561 R W S + I DSI + + + + + ++ +W +R Sbjct: 313 TFARLTWAISSIPIPLG-GEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNR 371 Query: 562 NDLVFSQKQTNVSNIICRAETFITN----------NEKPFSKNNHLHMWPQINNNWHYLT 711 N+LVF ++ N ++ RAE + KP + W + W Sbjct: 372 NELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCN 431 Query: 712 TDASWDYNTKQVGIGFALWNNFG 780 TDA+W+ + ++ GIG+ L N G Sbjct: 432 TDATWNRDNERCGIGWVLRNEKG 454 >ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana] gi|9294184|dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis thaliana] gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein [Arabidopsis thaliana] Length = 343 Score = 86.7 bits (213), Expect = 6e-15 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 19/217 (8%) Frame = +1 Query: 211 KIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCNML 390 KIW + TA ++K FLWK ++ +L T +NL+ R I N C RC + E++ H F C Sbjct: 17 KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76 Query: 391 RHIWYASKL---SIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561 + +W AS + +RT + ++S+ +N + ++ ++ +W SR Sbjct: 77 QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ-----LFNLAIWILWRLWKSR 131 Query: 562 NDLVFSQKQTNVSNIICRAETFI----TNNEKPFSKNNHLH------------MWPQINN 693 N LVF QK + N + RA + N S N +H W + + Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPS 191 Query: 694 NWHYLTTDASWDYNTKQVGIGFALWNNFGYCIGAGHS 804 W D ++++ T+ G+ + + G +G+G + Sbjct: 192 TWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQA 228 >ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] gi|355513943|gb|AES95566.1| Replication protein A 70 kDa DNA-binding subunit [Medicago truncatula] Length = 1723 Score = 85.1 bits (209), Expect = 2e-14 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 1/204 (0%) Frame = +1 Query: 205 WKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHALFHCN 384 W +WN+ +VK FLW++ N+LPTR L++R + + TC C N+ E + H F+C Sbjct: 1417 WVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCT 1476 Query: 385 MLRHIWYASKLSIRTDLWNQTD-SIGSIISTICSNLHDKTILRSTMSIFATTMFSIWISR 561 R W L + Q + S G + I L S I+A M+SIW R Sbjct: 1477 KSRQCWQQLGLWSKVQQKAQLNLSFGVTMFEILQELDS-----SQRVIWACVMWSIWKQR 1531 Query: 562 NDLVFSQKQTNVSNIICRAETFITNNEKPFSKNNHLHMWPQINNNWHYLTTDASWDYNTK 741 ND ++ + + + R +T + N +W + + DA++ + Sbjct: 1532 NDCIWRNEVMTTAAVRDRGLNLLTGWQ------NAQDIWRKPDEGHFKCNVDAAFFKESN 1585 Query: 742 QVGIGFALWNNFGYCIGAGHSRDT 813 +VGIG + ++ G + A S T Sbjct: 1586 RVGIGICIRDDSGRLVKARTSWST 1609 >ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis] gi|223538337|gb|EEF39944.1| nucleic acid binding protein, putative [Ricinus communis] Length = 483 Score = 84.7 bits (208), Expect = 2e-14 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 11/210 (5%) Frame = +1 Query: 193 NQQLWKKIWNIDTAERVKLFLWKAVTNSLPTRENLRNRTITNSATCPRCNNQVESNSHAL 372 N +W+++W ++ A + K+F+W+A+TN LP R NL R +T ++CP C +Q E+ H L Sbjct: 180 NVVVWRRLWKLNIAAKCKVFMWRALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHIL 239 Query: 373 FHCNMLRHIW-YASKLSIRTDLWNQTDSIGSIISTICSNLHDKTILRSTMSIFATTMFSI 549 C++ W Y + + + N + S+ D +I+ S F +S+ Sbjct: 240 VLCDVTTQSWKYVNLYQFLSQVSNLLEGARSVFEHF-----DDSIVAS----FVVLWWSL 290 Query: 550 WISRNDLVFSQKQTNVSNIICRAETFITNNEKPFSKNNHLH----------MWPQINNNW 699 W + ND+V++ K+ + + RA +F+ K ++ +W + Sbjct: 291 WTNMNDVVWNGKKLSWRAVASRASSFLFQWGKARKLTDYHQLGRHFAGGDCLWQKPATGK 350 Query: 700 HYLTTDASWDYNTKQVGIGFALWNNFGYCI 789 + L DAS + G F L +N G I Sbjct: 351 YKLNVDASSSAERGKSGASFVLRDNAGIWI 380