BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017153
         (836 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   394   e-107
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   393   e-107
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   393   e-107
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   392   e-107
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              390   e-106

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  394 bits (1011), Expect = e-107
 Identities = 196/278 (70%), Positives = 215/278 (77%)
 Frame = -2

Query: 835  VFIQISHAGHKQDGNXXXXXXXXXXXAQRNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPG 656
            VF+QIS  G +Q                 N I+EG ++VAKNPCLHPGDVRVL AVN P 
Sbjct: 720  VFVQISGTGGRQSFGDSLMFRGSGSHHD-NFILEGKIVVAKNPCLHPGDVRVLWAVNVPT 778

Query: 655  LHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVCWDHELIPPRVVEPMDYTPAPPAILD 476
            LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPP+ + PMDYTPAP  +LD
Sbjct: 779  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLD 838

Query: 475  HDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQDMAESVACRELARLFSIAVDFPKT 296
            HDV +EEV EYF NY+V+DSLGIIANAHT FADKE D A    C ELA+LFSIAVDFPKT
Sbjct: 839  HDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKT 898

Query: 295  GVLAEIPPHLRVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKS 116
            GV AEIP +LRVKEYPDFMEK DKPTYESQ VIGKLFREVKDI PH   I SFT +VA+ 
Sbjct: 899  GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 958

Query: 115  CYDYDMEVDGFEYFVDVAQQYKEKYDFKLGNLMDTYGI 2
             YD DMEV GFE +V  A  YK +YD+KLGNLMD YGI
Sbjct: 959  SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGI 996


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  393 bits (1009), Expect = e-107
 Identities = 192/250 (76%), Positives = 204/250 (81%)
 Frame = -2

Query: 751  RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572
            R  I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD
Sbjct: 741  RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 800

Query: 571  GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392
            GDIYFVCWD ELIPPR  EPMDYTP P  ILDHDV +EEV EYFANY+V+DSLGIIANAH
Sbjct: 801  GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 860

Query: 391  TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212
            TAFADKE   A S  C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE
Sbjct: 861  TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 920

Query: 211  SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32
            S+ VIGKLFREVK+  P    I SFT +VA   YD DMEVDGFE +VD A  YK  YDFK
Sbjct: 921  SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 980

Query: 31   LGNLMDTYGI 2
            LGNLMD YGI
Sbjct: 981  LGNLMDYYGI 990


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  393 bits (1009), Expect = e-107
 Identities = 192/250 (76%), Positives = 204/250 (81%)
 Frame = -2

Query: 751  RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572
            R  I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD
Sbjct: 731  RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 790

Query: 571  GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392
            GDIYFVCWD ELIPPR  EPMDYTP P  ILDHDV +EEV EYFANY+V+DSLGIIANAH
Sbjct: 791  GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 850

Query: 391  TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212
            TAFADKE   A S  C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE
Sbjct: 851  TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 910

Query: 211  SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32
            S+ VIGKLFREVK+  P    I SFT +VA   YD DMEVDGFE +VD A  YK  YDFK
Sbjct: 911  SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 970

Query: 31   LGNLMDTYGI 2
            LGNLMD YGI
Sbjct: 971  LGNLMDYYGI 980


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  392 bits (1007), Expect = e-107
 Identities = 192/250 (76%), Positives = 204/250 (81%)
 Frame = -2

Query: 751  RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572
            R  I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD
Sbjct: 741  RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 800

Query: 571  GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392
            GDIYFVCWD ELIPPR  EPMDYTP P  ILDHDV +EEV EYFANY+V+DSLGIIANAH
Sbjct: 801  GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 860

Query: 391  TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212
            TAFADKE   A S  C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE
Sbjct: 861  TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYE 920

Query: 211  SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32
            S+ VIGKLFREVK+  P    I SFT +VA   YD DMEVDGFE +VD A  YK  YDFK
Sbjct: 921  SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 980

Query: 31   LGNLMDTYGI 2
            LGNLMD YGI
Sbjct: 981  LGNLMDYYGI 990


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  390 bits (1003), Expect = e-106
 Identities = 189/249 (75%), Positives = 206/249 (82%)
 Frame = -2

Query: 748  NHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDG 569
            N I+EG ++VAKNPCLHPGDVRVL AVN P LHHMVDCVVFPQKG RPHPNECSGSDLDG
Sbjct: 546  NFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDG 605

Query: 568  DIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAHT 389
            DIYFVCWD +LIPP+ + PMDYTPAP  +LDHDV +EEV EYF NY+V+DSLGIIANAHT
Sbjct: 606  DIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHT 665

Query: 388  AFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYES 209
             FADKE D A    C ELA+LFSIAVDFPKTGV AEIP +LRVKEYPDFMEK DKPTYES
Sbjct: 666  VFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYES 725

Query: 208  QRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFKL 29
            Q VIGKLFREVKDI PH   I SFT +VA+  YD DMEV GFE +V  A  YK +YD+KL
Sbjct: 726  QSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKL 785

Query: 28   GNLMDTYGI 2
            GNLMD YGI
Sbjct: 786  GNLMDYYGI 794