BLASTX nr result
ID: Coptis24_contig00017153
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00017153 (836 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 394 e-107 emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 393 e-107 ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 393 e-107 ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 392 e-107 emb|CBI26820.3| unnamed protein product [Vitis vinifera] 390 e-106 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 394 bits (1011), Expect = e-107 Identities = 196/278 (70%), Positives = 215/278 (77%) Frame = -2 Query: 835 VFIQISHAGHKQDGNXXXXXXXXXXXAQRNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPG 656 VF+QIS G +Q N I+EG ++VAKNPCLHPGDVRVL AVN P Sbjct: 720 VFVQISGTGGRQSFGDSLMFRGSGSHHD-NFILEGKIVVAKNPCLHPGDVRVLWAVNVPT 778 Query: 655 LHHMVDCVVFPQKGIRPHPNECSGSDLDGDIYFVCWDHELIPPRVVEPMDYTPAPPAILD 476 LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPP+ + PMDYTPAP +LD Sbjct: 779 LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLD 838 Query: 475 HDVKLEEVHEYFANYMVSDSLGIIANAHTAFADKEQDMAESVACRELARLFSIAVDFPKT 296 HDV +EEV EYF NY+V+DSLGIIANAHT FADKE D A C ELA+LFSIAVDFPKT Sbjct: 839 HDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKT 898 Query: 295 GVLAEIPPHLRVKEYPDFMEKPDKPTYESQRVIGKLFREVKDIVPHRSCIPSFTWEVAKS 116 GV AEIP +LRVKEYPDFMEK DKPTYESQ VIGKLFREVKDI PH I SFT +VA+ Sbjct: 899 GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 958 Query: 115 CYDYDMEVDGFEYFVDVAQQYKEKYDFKLGNLMDTYGI 2 YD DMEV GFE +V A YK +YD+KLGNLMD YGI Sbjct: 959 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGI 996 >emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri] Length = 1107 Score = 393 bits (1009), Expect = e-107 Identities = 192/250 (76%), Positives = 204/250 (81%) Frame = -2 Query: 751 RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572 R I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD Sbjct: 741 RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 800 Query: 571 GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392 GDIYFVCWD ELIPPR EPMDYTP P ILDHDV +EEV EYFANY+V+DSLGIIANAH Sbjct: 801 GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 860 Query: 391 TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212 TAFADKE A S C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE Sbjct: 861 TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 920 Query: 211 SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32 S+ VIGKLFREVK+ P I SFT +VA YD DMEVDGFE +VD A YK YDFK Sbjct: 921 SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 980 Query: 31 LGNLMDTYGI 2 LGNLMD YGI Sbjct: 981 LGNLMDYYGI 990 >ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] Length = 1097 Score = 393 bits (1009), Expect = e-107 Identities = 192/250 (76%), Positives = 204/250 (81%) Frame = -2 Query: 751 RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572 R I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD Sbjct: 731 RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 790 Query: 571 GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392 GDIYFVCWD ELIPPR EPMDYTP P ILDHDV +EEV EYFANY+V+DSLGIIANAH Sbjct: 791 GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 850 Query: 391 TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212 TAFADKE A S C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE Sbjct: 851 TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYE 910 Query: 211 SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32 S+ VIGKLFREVK+ P I SFT +VA YD DMEVDGFE +VD A YK YDFK Sbjct: 911 SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 970 Query: 31 LGNLMDTYGI 2 LGNLMD YGI Sbjct: 971 LGNLMDYYGI 980 >ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] Length = 1107 Score = 392 bits (1007), Expect = e-107 Identities = 192/250 (76%), Positives = 204/250 (81%) Frame = -2 Query: 751 RNHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLD 572 R I+ G V+VAKNPCLHPGDVRVL AVN P L+HMVDCVVFPQKG+RPHPNECSGSDLD Sbjct: 741 RRFIITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLD 800 Query: 571 GDIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAH 392 GDIYFVCWD ELIPPR EPMDYTP P ILDHDV +EEV EYFANY+V+DSLGIIANAH Sbjct: 801 GDIYFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 860 Query: 391 TAFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYE 212 TAFADKE A S C ELAR FS+AVDFPKTGV AEIP HL VKEYPDFMEKPDKPTYE Sbjct: 861 TAFADKEPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYE 920 Query: 211 SQRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFK 32 S+ VIGKLFREVK+ P I SFT +VA YD DMEVDGFE +VD A YK YDFK Sbjct: 921 SKNVIGKLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFK 980 Query: 31 LGNLMDTYGI 2 LGNLMD YGI Sbjct: 981 LGNLMDYYGI 990 >emb|CBI26820.3| unnamed protein product [Vitis vinifera] Length = 919 Score = 390 bits (1003), Expect = e-106 Identities = 189/249 (75%), Positives = 206/249 (82%) Frame = -2 Query: 748 NHIVEGTVIVAKNPCLHPGDVRVLRAVNEPGLHHMVDCVVFPQKGIRPHPNECSGSDLDG 569 N I+EG ++VAKNPCLHPGDVRVL AVN P LHHMVDCVVFPQKG RPHPNECSGSDLDG Sbjct: 546 NFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDG 605 Query: 568 DIYFVCWDHELIPPRVVEPMDYTPAPPAILDHDVKLEEVHEYFANYMVSDSLGIIANAHT 389 DIYFVCWD +LIPP+ + PMDYTPAP +LDHDV +EEV EYF NY+V+DSLGIIANAHT Sbjct: 606 DIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHT 665 Query: 388 AFADKEQDMAESVACRELARLFSIAVDFPKTGVLAEIPPHLRVKEYPDFMEKPDKPTYES 209 FADKE D A C ELA+LFSIAVDFPKTGV AEIP +LRVKEYPDFMEK DKPTYES Sbjct: 666 VFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYES 725 Query: 208 QRVIGKLFREVKDIVPHRSCIPSFTWEVAKSCYDYDMEVDGFEYFVDVAQQYKEKYDFKL 29 Q VIGKLFREVKDI PH I SFT +VA+ YD DMEV GFE +V A YK +YD+KL Sbjct: 726 QSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKL 785 Query: 28 GNLMDTYGI 2 GNLMD YGI Sbjct: 786 GNLMDYYGI 794