BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017141
         (580 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein lig...   202   4e-50
ref|XP_003602697.1| X-linked retinitis pigmentosa GTPase regulat...   199   2e-49
emb|CAC35876.1| putative protein [Arabidopsis thaliana]               197   1e-48
ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein lig...   196   2e-48
ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arab...   196   2e-48

>ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis
           sativus]
          Length = 481

 Score =  202 bits (513), Expect = 4e-50
 Identities = 87/117 (74%), Positives = 99/117 (84%)
 Frame = +3

Query: 24  GGELYTWGSNENGCLGVGCTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVSGGKVFTWG 203
           GG+LY+WGSNENGCLG G T   + PERVEGPF K  V KVSCGWKHTAA+SGG +FTWG
Sbjct: 364 GGDLYSWGSNENGCLGNGSTSVSHLPERVEGPFSKSPVSKVSCGWKHTAAISGGAIFTWG 423

Query: 204 WGGSHGTFSVDGHSPGGQLGHGDDIDYYEPMMVEFGKNVKALEVSCGFNHTGAILEY 374
           WGGSHGTFSVDGHS GGQLGHG D+DY +P  ++ G+NVK ++VSCGFNHTGAILEY
Sbjct: 424 WGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIDLGENVKVVQVSCGFNHTGAILEY 480



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
 Frame = +3

Query: 27  GELYTWGSNENGCLGVG--CTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVS-GGKVFT 197
           GELY WG N NG LG+G    +A++ P +V+       + + + G  H+ AV+ GG+VF+
Sbjct: 200 GELYMWGVNSNGQLGLGKKSAKAVHLPTKVDS-LDGIVIKRAALGSDHSIAVADGGEVFS 258

Query: 198 WGWGGSHGTFSVDGHSPGGQLGHGDDIDY---------YEPMMVEFGKNVKALEVSCGFN 350
           WG          DG S  G+LGHG +  +         + P +++  + +K   V+ G  
Sbjct: 259 WG----------DGRS--GRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGML 306

Query: 351 HTGAILE 371
           H+  + E
Sbjct: 307 HSACVDE 313


>ref|XP_003602697.1| X-linked retinitis pigmentosa GTPase regulator [Medicago
           truncatula] gi|355491745|gb|AES72948.1| X-linked
           retinitis pigmentosa GTPase regulator [Medicago
           truncatula]
          Length = 244

 Score =  199 bits (507), Expect = 2e-49
 Identities = 87/117 (74%), Positives = 102/117 (87%)
 Frame = +3

Query: 27  GELYTWGSNENGCLGVGCTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVSGGKVFTWGW 206
           GELYTWGSNENGCLG+G + AI+ PE+V+GPFL+ SV +VSCGWKHTAA+SGG++FTWGW
Sbjct: 128 GELYTWGSNENGCLGIGSSYAIHLPEKVQGPFLESSVVQVSCGWKHTAAISGGRIFTWGW 187

Query: 207 GGSHGTFSVDGHSPGGQLGHGDDIDYYEPMMVEFGKNVKALEVSCGFNHTGAILEYA 377
           GGS+GTFS DGHS GGQLGHG D+DY  P  V F ++VKAL+VSCGFNHTGAI EYA
Sbjct: 188 GGSNGTFSDDGHSSGGQLGHGSDVDYINPSRVCFAEDVKALQVSCGFNHTGAIFEYA 244


>emb|CAC35876.1| putative protein [Arabidopsis thaliana]
          Length = 435

 Score =  197 bits (500), Expect = 1e-48
 Identities = 85/118 (72%), Positives = 97/118 (82%)
 Frame = +3

Query: 21  GGGELYTWGSNENGCLGVGCTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVSGGKVFTW 200
           GGGELYTWGSNENGCLG   T   + P RVEGPFL+ +V +VSCGWKHTAA+S   VFTW
Sbjct: 317 GGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNNVFTW 376

Query: 201 GWGGSHGTFSVDGHSPGGQLGHGDDIDYYEPMMVEFGKNVKALEVSCGFNHTGAILEY 374
           GWGGSHGTFSVDGHS GGQLGHG D+DY  P MV+ GKNV+A+ +SCGFNHT A+LE+
Sbjct: 377 GWGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLEH 434



 Score = 55.1 bits (131), Expect = 8e-06
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
 Frame = +3

Query: 27  GELYTWGSNENGCLGVG--CTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVS-GGKVFT 197
           GELY WG N +G LG+G      +  P +VE      ++  V+ G +H+ AV+ GG+V +
Sbjct: 163 GELYMWGKNSSGQLGLGKKAARVVRVPTKVEA-LHGITIQSVALGSEHSVAVTDGGEVLS 221

Query: 198 WGWGGSHGTFSVDGHSPGGQLGHGDDIDY---------YEPMMVEFGKNVKALEVSCGFN 350
           WG GGS            G+LGHG              + P +++  + +K   V+ G  
Sbjct: 222 WGGGGS------------GRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLL 269

Query: 351 HT 356
           H+
Sbjct: 270 HS 271


>ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine
           max]
          Length = 417

 Score =  196 bits (499), Expect = 2e-48
 Identities = 87/117 (74%), Positives = 101/117 (86%)
 Frame = +3

Query: 27  GELYTWGSNENGCLGVGCTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVSGGKVFTWGW 206
           GELYTWGSNENGCLG+G ++ I+ PE+V+GPFLK SV +VSCGWKHTAA+S G+VFTWGW
Sbjct: 301 GELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGW 360

Query: 207 GGSHGTFSVDGHSPGGQLGHGDDIDYYEPMMVEFGKNVKALEVSCGFNHTGAILEYA 377
           GGS+GTFS  GHS  GQLGHG D+DY  P  V FG++VKAL+VSCGFNHTGAILEYA
Sbjct: 361 GGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDVKALQVSCGFNHTGAILEYA 417


>ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
           lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein
           ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score =  196 bits (499), Expect = 2e-48
 Identities = 85/117 (72%), Positives = 97/117 (82%)
 Frame = +3

Query: 24  GGELYTWGSNENGCLGVGCTEAIYEPERVEGPFLKFSVFKVSCGWKHTAAVSGGKVFTWG 203
           GGELYTWGSNENGCLG   T   + P RVEGPFL+ +V +VSCGWKHTAA+S  KVFTWG
Sbjct: 317 GGELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNKVFTWG 376

Query: 204 WGGSHGTFSVDGHSPGGQLGHGDDIDYYEPMMVEFGKNVKALEVSCGFNHTGAILEY 374
           WGGSHGTFSVDGHS GGQLGHG D+DY  P MV+ GKNV+A+ +SCGFNHT A+LE+
Sbjct: 377 WGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLEH 433