BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017071
         (585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              335   3e-90
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   335   3e-90
gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tu...   317   7e-85
gb|ACJ63306.1| RNA polymerase III large subunit [Acorus calamus]      317   1e-84
gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parvif...   315   4e-84

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  335 bits (860), Expect = 3e-90
 Identities = 161/194 (82%), Positives = 178/194 (91%)
 Frame = +3

Query: 3    KATVGNGNKDGLFSVLLRDYNVHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQ 182
            KAT+GNGNKDGLFSVLLRDYN HAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG LLN 
Sbjct: 649  KATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLND 708

Query: 183  QKKARIDEGYEKCDDLIREHIKGNIELPPGSDSALTLEAEISKVLNNIRETTANVCMKEL 362
            QK  RI+EGYE C +LI+++ KG ++L PG ++A TLEAEI+ VLN IRETTANVCM+EL
Sbjct: 709  QKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEEL 768

Query: 363  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKCKTPSAK 542
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRK KTP AK
Sbjct: 769  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAK 828

Query: 543  GFVANSFYSGLTAT 584
            GFVA+SFY+GLTAT
Sbjct: 829  GFVASSFYTGLTAT 842


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  335 bits (860), Expect = 3e-90
 Identities = 161/194 (82%), Positives = 178/194 (91%)
 Frame = +3

Query: 3    KATVGNGNKDGLFSVLLRDYNVHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQ 182
            KAT+GNGNKDGLFSVLLRDYN HAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG LLN 
Sbjct: 649  KATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLND 708

Query: 183  QKKARIDEGYEKCDDLIREHIKGNIELPPGSDSALTLEAEISKVLNNIRETTANVCMKEL 362
            QK  RI+EGYE C +LI+++ KG ++L PG ++A TLEAEI+ VLN IRETTANVCM+EL
Sbjct: 709  QKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEEL 768

Query: 363  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKCKTPSAK 542
            HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFPRK KTP AK
Sbjct: 769  HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAK 828

Query: 543  GFVANSFYSGLTAT 584
            GFVA+SFY+GLTAT
Sbjct: 829  GFVASSFYTGLTAT 842


>gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
          Length = 546

 Score =  317 bits (813), Expect = 7e-85
 Identities = 153/194 (78%), Positives = 169/194 (87%)
 Frame = +3

Query: 3   KATVGNGNKDGLFSVLLRDYNVHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQ 182
           KAT+GNGNKDGLFSVLLRDY  HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGE LN+
Sbjct: 145 KATLGNGNKDGLFSVLLRDYGAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEHLNR 204

Query: 183 QKKARIDEGYEKCDDLIREHIKGNIELPPGSDSALTLEAEISKVLNNIRETTANVCMKEL 362
            KK  I++GY++CDDLI  +  G ++L PG ++A TLE+ I+  LN+IRE  A VCM  L
Sbjct: 205 NKKLEIEKGYKECDDLINRYNTGGLKLLPGCNAAQTLESNITGKLNDIREAAAKVCMASL 264

Query: 363 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKCKTPSAK 542
           HWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPNGFIDRSLPHFP   KTPSAK
Sbjct: 265 HWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPINSKTPSAK 324

Query: 543 GFVANSFYSGLTAT 584
           GFVANSFY+GLTAT
Sbjct: 325 GFVANSFYTGLTAT 338


>gb|ACJ63306.1| RNA polymerase III large subunit [Acorus calamus]
          Length = 544

 Score =  317 bits (811), Expect = 1e-84
 Identities = 154/194 (79%), Positives = 171/194 (88%)
 Frame = +3

Query: 3   KATVGNGNKDGLFSVLLRDYNVHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQ 182
           KAT+GNGNKDGLFSVLLRDYN HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPG  LN 
Sbjct: 145 KATLGNGNKDGLFSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGHHLNL 204

Query: 183 QKKARIDEGYEKCDDLIREHIKGNIELPPGSDSALTLEAEISKVLNNIRETTANVCMKEL 362
           +KK  I++ YEKCD+LI    KG + L PG ++A TLE++I+  LN IR+ TA+VCMKEL
Sbjct: 205 RKKETIEKSYEKCDNLICSFNKGELVLQPGCNAAQTLESQITGELNKIRQDTADVCMKEL 264

Query: 363 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKCKTPSAK 542
           HWRNSPLI SQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDR+LPHFP+  KTPSAK
Sbjct: 265 HWRNSPLITSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPKSSKTPSAK 324

Query: 543 GFVANSFYSGLTAT 584
           GFVANSFY+GLTAT
Sbjct: 325 GFVANSFYTGLTAT 338


>gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parviflorum]
          Length = 546

 Score =  315 bits (807), Expect = 4e-84
 Identities = 155/194 (79%), Positives = 168/194 (86%)
 Frame = +3

Query: 3   KATVGNGNKDGLFSVLLRDYNVHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNQ 182
           KAT+GNGNK+GLF+VLLRDYN HAAASCMNRLAKLSARWIGNHGFSIGIDDVQPG  L  
Sbjct: 143 KATLGNGNKNGLFTVLLRDYNTHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGARLTA 202

Query: 183 QKKARIDEGYEKCDDLIREHIKGNIELPPGSDSALTLEAEISKVLNNIRETTANVCMKEL 362
           QK+ RI EGY KCD  I  + KG + L PG +SA TLEAEI+  LN IRE   +VC++EL
Sbjct: 203 QKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIREIAGSVCLREL 262

Query: 363 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKCKTPSAK 542
           HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPR  KTP+AK
Sbjct: 263 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAK 322

Query: 543 GFVANSFYSGLTAT 584
           GFVANSFY+GLTAT
Sbjct: 323 GFVANSFYTGLTAT 336