BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017066
         (1338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus ...   520   e-145
emb|CBI35182.3| unnamed protein product [Vitis vinifera]              511   e-142
ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [...   511   e-142
ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [...   506   e-141
ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g...   504   e-140

>ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
            gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein,
            putative [Ricinus communis]
          Length = 548

 Score =  520 bits (1340), Expect = e-145
 Identities = 272/440 (61%), Positives = 318/440 (72%), Gaps = 8/440 (1%)
 Frame = +2

Query: 38   EKRWPGWPGENVYRMLVPVQKVGGIIGRKGELIKKMCEETKARIKILDAPPGTQERAVMV 217
            EK+WPGWPGE+V+RMLVP QKVG IIGRKGE IKK+ EET+ARIKILD PPGT ERAVMV
Sbjct: 142  EKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMV 201

Query: 218  SAKEEPDASIPPAIDGLLRVHSRVVDGLNGDLAHAPPNSGLTVSSRLLVVATQAGNLIGK 397
            SAKEEPD+++PPA+DGLLRVH R+VDGL+GD +HA   +G  VS+RLLV A+QAG+LIGK
Sbjct: 202  SAKEEPDSALPPAMDGLLRVHKRIVDGLDGDSSHASSGTGTKVSTRLLVPASQAGSLIGK 261

Query: 398  QGATIKSIQEASNTIVRVLGSEDLPVFALEDDRIVEVQGEPAGVHKAVELIAAHLRKFLV 577
            QG T+KSIQEAS+ +VRVLG+EDLPVFAL+DDR+VEV G+ AGVHKAVELIA+HLRKFLV
Sbjct: 262  QGGTVKSIQEASSCVVRVLGAEDLPVFALQDDRVVEVLGDAAGVHKAVELIASHLRKFLV 321

Query: 578  DRSVIGLFEMHMQMLNSQMEPNMPPHQSWXXXXXXXXXXXXXXXXXXXQYMPPPRQHDNY 757
            DRS+I LFEMHMQM N     +MPPHQSW                   QYMPPPRQ +NY
Sbjct: 322  DRSIIPLFEMHMQMQNPPHMEHMPPHQSWGPPQGIPPNAGGGPGYGNPQYMPPPRQIENY 381

Query: 758  YPQHD-HPPMDKQPHQGLSMYGREAPMGFHPSANVQPPPALMTPITHHMQIPLSFADAVI 934
            YP  D  PPM+KQPHQG+S YGREAPMG H S+N Q  P+++T IT  MQIPLS+ADAVI
Sbjct: 382  YPPADLPPPMEKQPHQGISAYGREAPMGVHGSSNSQAAPSMITQITQQMQIPLSYADAVI 441

Query: 935  GNAGANISYIRRVSGAAITVQETRGVPGEMTVEINGSASQAQTAQQLIQNFMXXXXXXXX 1114
            G AG +ISYIRR SGA +T+QETRGVPGEMTVEI+G+ASQ QTAQQLIQNFM        
Sbjct: 442  GTAGTSISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE------ 495

Query: 1115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXQNFMAEAASQNPVGGAADPGYNSYSTQN--FS 1288
                                            A A +Q   GG+ D GYN Y+     ++
Sbjct: 496  --------------------------------AGAPTQAQTGGSTDQGYNPYAAHGSVYA 523

Query: 1289 SP---PGH--NAGGYGAVYG 1333
            SP   PGH  + GGYG+VYG
Sbjct: 524  SPPSNPGHAGHTGGYGSVYG 543


>emb|CBI35182.3| unnamed protein product [Vitis vinifera]
          Length = 511

 Score =  511 bits (1317), Expect = e-142
 Identities = 274/452 (60%), Positives = 321/452 (71%), Gaps = 9/452 (1%)
 Frame = +2

Query: 8    KNDVAGVVVAEKRWPGWPGENVYRMLVPVQKVGGIIGRKGELIKKMCEETKARIKILDAP 187
            ++D + +   EKRWPGWPGE+V+RMLVP QKVG IIGRKGE IKK+ EET+ARIKILD P
Sbjct: 97   RDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP 156

Query: 188  PGTQERAVMVSAKEEPDASIPPAIDGLLRVHSRVVDGLNGDLAHAPPNSGLTVSSRLLVV 367
            PGT ERAVMVSAKEEPD+S+PPA+DGLL+VH R+VDGL GD +H PP  G  VS+RLLV 
Sbjct: 157  PGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIVDGLEGDSSHMPP--GGKVSTRLLVA 214

Query: 368  ATQAGNLIGKQGATIKSIQEASNTIVRVLGSEDLPVFALEDDRIVEVQGEPAGVHKAVEL 547
            A+QAG+LIGKQG T+KSIQEASN IVRVLG+EDLP+FAL+DDR+VEV GEP GVHKAVEL
Sbjct: 215  ASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVEL 274

Query: 548  IAAHLRKFLVDRSVIGLFEMHMQMLNSQMEPNMPPHQSW-XXXXXXXXXXXXXXXXXXXQ 724
            IA+HLRKFLVDRSVI LFEM MQM N  +E +MPPHQ W                     
Sbjct: 275  IASHLRKFLVDRSVIPLFEMQMQMSNPPIE-HMPPHQPWGPPQGLPPNASGGPGFGPNPP 333

Query: 725  YMPPPRQHDNYYPQHD-HPPMDKQPHQGLSMYGREAPMGFHPSANVQPPPALMTPITHHM 901
            YMPPPRQ D+YYP  +  PP++KQPHQG+S YGRE PMG H  ++ QP P+++T +T  M
Sbjct: 334  YMPPPRQLDSYYPPPELPPPVEKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVTQQM 393

Query: 902  QIPLSFADAVIGNAGANISYIRRVSGAAITVQETRGVPGEMTVEINGSASQAQTAQQLIQ 1081
            QIPLS+ADAVIG AGA+ISYIRR SGA +T+QETRGVPGEMTVEING+ASQ Q AQQLIQ
Sbjct: 394  QIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQ 453

Query: 1082 NFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNFMAEAASQNPVGGAADPGY 1261
            NFM                                        A A +Q   GG+AD GY
Sbjct: 454  NFMAE--------------------------------------AAAPAQAQAGGSADQGY 475

Query: 1262 NSYSTQN--FSSP---PGH--NAGGYGAVYGA 1336
            NSY+     ++SP   P H  + GGYG VYGA
Sbjct: 476  NSYAAHGSMYASPASNPAHASHTGGYGPVYGA 507


>ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
          Length = 442

 Score =  511 bits (1317), Expect = e-142
 Identities = 274/452 (60%), Positives = 321/452 (71%), Gaps = 9/452 (1%)
 Frame = +2

Query: 8    KNDVAGVVVAEKRWPGWPGENVYRMLVPVQKVGGIIGRKGELIKKMCEETKARIKILDAP 187
            ++D + +   EKRWPGWPGE+V+RMLVP QKVG IIGRKGE IKK+ EET+ARIKILD P
Sbjct: 28   RDDDSAIGGGEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP 87

Query: 188  PGTQERAVMVSAKEEPDASIPPAIDGLLRVHSRVVDGLNGDLAHAPPNSGLTVSSRLLVV 367
            PGT ERAVMVSAKEEPD+S+PPA+DGLL+VH R+VDGL GD +H PP  G  VS+RLLV 
Sbjct: 88   PGTAERAVMVSAKEEPDSSLPPAMDGLLKVHKRIVDGLEGDSSHMPP--GGKVSTRLLVA 145

Query: 368  ATQAGNLIGKQGATIKSIQEASNTIVRVLGSEDLPVFALEDDRIVEVQGEPAGVHKAVEL 547
            A+QAG+LIGKQG T+KSIQEASN IVRVLG+EDLP+FAL+DDR+VEV GEP GVHKAVEL
Sbjct: 146  ASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVEL 205

Query: 548  IAAHLRKFLVDRSVIGLFEMHMQMLNSQMEPNMPPHQSW-XXXXXXXXXXXXXXXXXXXQ 724
            IA+HLRKFLVDRSVI LFEM MQM N  +E +MPPHQ W                     
Sbjct: 206  IASHLRKFLVDRSVIPLFEMQMQMSNPPIE-HMPPHQPWGPPQGLPPNASGGPGFGPNPP 264

Query: 725  YMPPPRQHDNYYPQHD-HPPMDKQPHQGLSMYGREAPMGFHPSANVQPPPALMTPITHHM 901
            YMPPPRQ D+YYP  +  PP++KQPHQG+S YGRE PMG H  ++ QP P+++T +T  M
Sbjct: 265  YMPPPRQLDSYYPPPELPPPVEKQPHQGISAYGREVPMGGHAPSSAQPAPSMITQVTQQM 324

Query: 902  QIPLSFADAVIGNAGANISYIRRVSGAAITVQETRGVPGEMTVEINGSASQAQTAQQLIQ 1081
            QIPLS+ADAVIG AGA+ISYIRR SGA +T+QETRGVPGEMTVEING+ASQ Q AQQLIQ
Sbjct: 325  QIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQ 384

Query: 1082 NFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNFMAEAASQNPVGGAADPGY 1261
            NFM                                        A A +Q   GG+AD GY
Sbjct: 385  NFMAE--------------------------------------AAAPAQAQAGGSADQGY 406

Query: 1262 NSYSTQN--FSSP---PGH--NAGGYGAVYGA 1336
            NSY+     ++SP   P H  + GGYG VYGA
Sbjct: 407  NSYAAHGSMYASPASNPAHASHTGGYGPVYGA 438


>ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
          Length = 483

 Score =  506 bits (1303), Expect = e-141
 Identities = 272/446 (60%), Positives = 319/446 (71%), Gaps = 11/446 (2%)
 Frame = +2

Query: 29   VVAEKRWPGWPGENVYRMLVPVQKVGGIIGRKGELIKKMCEETKARIKILDAPPGTQERA 208
            VV+EK+WPGWPGE+V+RMLVP QKVG IIGRKGE IKK+ EET+ARIKILD PPGT ERA
Sbjct: 72   VVSEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERA 131

Query: 209  VMVSAKEEPDASIPPAIDGLLRVHSRVVDGLNGDLAHAPPNSGLTVSSRLLVVATQAGNL 388
            VMVSAK+EPD++ PPA+DGLLRVH R+VDGL GD AHA PN+G  VS+RLLV A+QAG+L
Sbjct: 132  VMVSAKDEPDSAFPPAVDGLLRVHKRIVDGLEGDNAHA-PNAGSKVSTRLLVAASQAGSL 190

Query: 389  IGKQGATIKSIQEASNTIVRVLGSEDLPVFALEDDRIVEVQGEPAGVHKAVELIAAHLRK 568
            IGKQG T+KSIQE SN IVRVLGSEDLPVFAL+DDR+VEV G+PAGVHKAVELIA+HLRK
Sbjct: 191  IGKQGGTVKSIQEESNCIVRVLGSEDLPVFALQDDRVVEVLGDPAGVHKAVELIASHLRK 250

Query: 569  FLVDRSVIGLFEMHMQMLNSQMEPNM--PPHQSW--XXXXXXXXXXXXXXXXXXXQYM-P 733
            FLVDRS+I +FEM+MQM N QM+ +M  PPHQ W                     QYM P
Sbjct: 251  FLVDRSIIPVFEMNMQMSNPQMDQHMPPPPHQPWGPPQGMPPNAGGGPGFGPNPPQYMPP 310

Query: 734  PPRQHDNYYPQHD-HPPMDKQPHQGLSMYGREAPMGFHPSANVQPPPALMTPITHHMQIP 910
            PPRQ DNYYP  +    M+KQPH G+S YGREAPMG H ++N Q  P+++T  T  MQIP
Sbjct: 311  PPRQFDNYYPPAEMQAVMEKQPHHGISAYGREAPMGVHAASNAQSAPSIVTQTTQQMQIP 370

Query: 911  LSFADAVIGNAGANISYIRRVSGAAITVQETRGVPGEMTVEINGSASQAQTAQQLIQNFM 1090
            LSFADAVIG AGA+ISYIRR SGA +T+QETRGVPGEMTVE++G+ASQ Q AQQLIQNFM
Sbjct: 371  LSFADAVIGTAGASISYIRRASGATVTIQETRGVPGEMTVEMSGTASQVQAAQQLIQNFM 430

Query: 1091 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNFMAEAASQNPVGGAADPGYNSY 1270
                                                    A A +Q   G + D GYNSY
Sbjct: 431  AG--------------------------------------AGAPAQPQAGVSTDQGYNSY 452

Query: 1271 STQN--FSSPPGH---NAGGYGAVYG 1333
            +     ++SPP +   +AGGYG+VYG
Sbjct: 453  AAHGSVYASPPANPAAHAGGYGSVYG 478


>ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
          Length = 443

 Score =  504 bits (1297), Expect = e-140
 Identities = 262/442 (59%), Positives = 313/442 (70%), Gaps = 6/442 (1%)
 Frame = +2

Query: 29   VVAEKRWPGWPGENVYRMLVPVQKVGGIIGRKGELIKKMCEETKARIKILDAPPGTQERA 208
            VVAEK+WPGWPGE+V+RMLVP QKVGGIIGRKGE IKK+ EET+AR+KILD PPGT +RA
Sbjct: 31   VVAEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRA 90

Query: 209  VMVSAKEEPDASIPPAIDGLLRVHSRVVDGLNGDLAHAPPNSGLTVSSRLLVVATQAGNL 388
            VM+SAKEEP +S+PPA+DGLLR+H R++DGL  D  HAP      VS++LLV A+QAG+L
Sbjct: 91   VMISAKEEPGSSVPPAVDGLLRIHKRIIDGLESDFTHAPSGVAGKVSTKLLVPASQAGSL 150

Query: 389  IGKQGATIKSIQEASNTIVRVLGSEDLPVFALEDDRIVEVQGEPAGVHKAVELIAAHLRK 568
            IGKQG T+KSIQEASN IVRVLG+EDLP+FAL+DDR+VEV G+PAGVHKA+ELIA+HLRK
Sbjct: 151  IGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGDPAGVHKALELIASHLRK 210

Query: 569  FLVDRSVIGLFEMHMQMLNSQMEPNMPPHQSW-XXXXXXXXXXXXXXXXXXXQYMPPPRQ 745
            FLVDR VI +FEM+MQ  N     +MPPHQSW                    QYMPPPRQ
Sbjct: 211  FLVDRGVIPIFEMNMQTANPHHAEHMPPHQSWGPSQGLPPNVGGGPGFGPPSQYMPPPRQ 270

Query: 746  HDNYYPQHD-HPPMDKQPHQGLSMYGREAPMGFHPSANVQPPPALMTPITHHMQIPLSFA 922
             D+YYP  +  PP+D+QPHQG+S YGR+A +G H S+N Q  P+++T IT  MQIPLS+A
Sbjct: 271  LDSYYPSAEMPPPVDRQPHQGISAYGRDASIGVHASSNTQSAPSIVTQITQQMQIPLSYA 330

Query: 923  DAVIGNAGANISYIRRVSGAAITVQETRGVPGEMTVEINGSASQAQTAQQLIQNFMXXXX 1102
            DAVIG AGA+ISYIRR SGA +T+QE RGVPGEMTVEI+G+ASQ QTAQQLIQNFM    
Sbjct: 331  DAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 390

Query: 1103 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNFMAEAASQNPVGGAADPGYNSYSTQN 1282
                                                A  A       AAD GYNSY    
Sbjct: 391  AA---------------------------------AAAPAQPQTTVPAADQGYNSYPAHG 417

Query: 1283 --FSSPPGH--NAGGYGAVYGA 1336
              ++SPP +  +AGGYG+VYGA
Sbjct: 418  SVYASPPSNPGHAGGYGSVYGA 439