BLASTX nr result

ID: Coptis24_contig00017047 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017047
         (677 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37536.3| unnamed protein product [Vitis vinifera]              204   1e-50
ref|XP_002522842.1| GDP-mannose transporter, putative [Ricinus c...   202   5e-50
ref|XP_002274276.2| PREDICTED: GDP-mannose transporter GONST1-li...   198   9e-49
ref|XP_002306245.1| predicted protein [Populus trichocarpa] gi|2...   171   2e-40
ref|XP_003559476.1| PREDICTED: GDP-mannose transporter GONST1-li...   169   5e-40

>emb|CBI37536.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  204 bits (519), Expect = 1e-50
 Identities = 107/183 (58%), Positives = 131/183 (71%), Gaps = 12/183 (6%)
 Frame = +3

Query: 165 GALVDTPDPVL---------IVERGGFTSR---EQNGVIDQLSSPARRDIVNRSLSAVKS 308
           G  +D+PDPVL          V R G  S    E NGV+DQ+SSP RR+++NRS+ ++K 
Sbjct: 254 GPSLDSPDPVLERNLMEDTRTVIRSGERSHNLHETNGVLDQVSSPLRREVLNRSVFSMKP 313

Query: 309 FGNDDVDLEGGKEEKDIDKAVRGTRVVKVRNQAVLSGLAYCISSCSMILINKLVLSSYNF 488
            G+++ DLE GK EKD +K+VR  RVV++ NQA+LSG AYCISSCSMIL+NK VLSSY+F
Sbjct: 314 LGSEETDLEDGKLEKDREKSVRSNRVVRIHNQALLSGFAYCISSCSMILVNKFVLSSYDF 373

Query: 489 NAGISLMLYQNXXXXXXXXXXXXXXXXXTEPLTWRLIRVWLPVNFIFVGMLITSMFSLKY 668
           NAGISLM+YQN                 TEPLTW+LI+VWLPVN IFVGML+TSMFSLKY
Sbjct: 374 NAGISLMIYQNLVSVIVVTVLSFFGLITTEPLTWKLIKVWLPVNVIFVGMLVTSMFSLKY 433

Query: 669 INV 677
           INV
Sbjct: 434 INV 436


>ref|XP_002522842.1| GDP-mannose transporter, putative [Ricinus communis]
           gi|223537926|gb|EEF39540.1| GDP-mannose transporter,
           putative [Ricinus communis]
          Length = 485

 Score =  202 bits (514), Expect = 5e-50
 Identities = 99/150 (66%), Positives = 116/150 (77%)
 Frame = +3

Query: 228 EQNGVIDQLSSPARRDIVNRSLSAVKSFGNDDVDLEGGKEEKDIDKAVRGTRVVKVRNQA 407
           E NGV+DQ+SSP R ++VNRS   ++S  ND++DLEGGK EKD DK  R  R +K++NQA
Sbjct: 19  ESNGVVDQISSPLRNEVVNRSSFTMRSHENDEIDLEGGKLEKDRDKTTRSNRALKIQNQA 78

Query: 408 VLSGLAYCISSCSMILINKLVLSSYNFNAGISLMLYQNXXXXXXXXXXXXXXXXXTEPLT 587
           +LSGLAYCISSCSMIL+NK VLSSY+FNAGISLM+YQN                 TEPLT
Sbjct: 79  LLSGLAYCISSCSMILVNKFVLSSYDFNAGISLMVYQNFISVIIVSVLSFLGIISTEPLT 138

Query: 588 WRLIRVWLPVNFIFVGMLITSMFSLKYINV 677
           WRLI+VWLPVN IFVGML+TSMFSLKYINV
Sbjct: 139 WRLIKVWLPVNVIFVGMLVTSMFSLKYINV 168


>ref|XP_002274276.2| PREDICTED: GDP-mannose transporter GONST1-like [Vitis vinifera]
          Length = 501

 Score =  198 bits (503), Expect = 9e-49
 Identities = 96/150 (64%), Positives = 118/150 (78%)
 Frame = +3

Query: 228 EQNGVIDQLSSPARRDIVNRSLSAVKSFGNDDVDLEGGKEEKDIDKAVRGTRVVKVRNQA 407
           E NGV+DQ+SSP RR+++NRS+ ++K  G+++ DLE GK EKD +K+VR  RVV++ NQA
Sbjct: 19  ETNGVLDQVSSPLRREVLNRSVFSMKPLGSEETDLEDGKLEKDREKSVRSNRVVRIHNQA 78

Query: 408 VLSGLAYCISSCSMILINKLVLSSYNFNAGISLMLYQNXXXXXXXXXXXXXXXXXTEPLT 587
           +LSG AYCISSCSMIL+NK VLSSY+FNAGISLM+YQN                 TEPLT
Sbjct: 79  LLSGFAYCISSCSMILVNKFVLSSYDFNAGISLMIYQNLVSVIVVTVLSFFGLITTEPLT 138

Query: 588 WRLIRVWLPVNFIFVGMLITSMFSLKYINV 677
           W+LI+VWLPVN IFVGML+TSMFSLKYINV
Sbjct: 139 WKLIKVWLPVNVIFVGMLVTSMFSLKYINV 168


>ref|XP_002306245.1| predicted protein [Populus trichocarpa] gi|222855694|gb|EEE93241.1|
           predicted protein [Populus trichocarpa]
          Length = 336

 Score =  171 bits (432), Expect = 2e-40
 Identities = 85/126 (67%), Positives = 97/126 (76%)
 Frame = +3

Query: 300 VKSFGNDDVDLEGGKEEKDIDKAVRGTRVVKVRNQAVLSGLAYCISSCSMILINKLVLSS 479
           +KS  ND++DLEGGK  KD DK  R   V++++NQA+ SG+AYCISSCSMIL+NK VLSS
Sbjct: 1   MKSHENDEIDLEGGKLVKDKDKPTRSKGVIRIQNQALFSGIAYCISSCSMILVNKYVLSS 60

Query: 480 YNFNAGISLMLYQNXXXXXXXXXXXXXXXXXTEPLTWRLIRVWLPVNFIFVGMLITSMFS 659
           Y+FNAGISLMLYQN                 TEPLTWRLI+VWLPVNFIFVGMLITSMFS
Sbjct: 61  YDFNAGISLMLYQNFISVIIVSTLRFLGVISTEPLTWRLIKVWLPVNFIFVGMLITSMFS 120

Query: 660 LKYINV 677
           LKYINV
Sbjct: 121 LKYINV 126


>ref|XP_003559476.1| PREDICTED: GDP-mannose transporter GONST1-like [Brachypodium
           distachyon]
          Length = 415

 Score =  169 bits (428), Expect = 5e-40
 Identities = 98/189 (51%), Positives = 117/189 (61%), Gaps = 12/189 (6%)
 Frame = +3

Query: 147 SRVMPQGALVD------------TPDPVLIVERGGFTSREQNGVIDQLSSPARRDIVNRS 290
           +R+ P G  VD            T  P +  E+  F  REQ G    L+SP RR++ NRS
Sbjct: 19  TRIPPLGIHVDPDTPPGRKASEITTSPPVNGEKSIF--REQIGGYSALASPLRREVGNRS 76

Query: 291 LSAVKSFGNDDVDLEGGKEEKDIDKAVRGTRVVKVRNQAVLSGLAYCISSCSMILINKLV 470
           ++  +SF  DD DLE  K  KD D+     R+  ++NQ++LSGLAYCI+SCSMIL+NK V
Sbjct: 77  MA--RSFSVDDTDLEDAKASKDRDRPSHFLRLPDIQNQSLLSGLAYCIASCSMILVNKFV 134

Query: 471 LSSYNFNAGISLMLYQNXXXXXXXXXXXXXXXXXTEPLTWRLIRVWLPVNFIFVGMLITS 650
           LS Y FNAGI LMLYQN                 TEPLTWRLI+VWLPVN IFVGML TS
Sbjct: 135 LSGYGFNAGIFLMLYQNIVSVTIVSTLSLSGVIRTEPLTWRLIKVWLPVNIIFVGMLTTS 194

Query: 651 MFSLKYINV 677
           MFSLKYINV
Sbjct: 195 MFSLKYINV 203


Top