BLASTX nr result

ID: Coptis24_contig00017043 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017043
         (654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284968.1| PREDICTED: gibberellin 20 oxidase 3 [Vitis v...   103   4e-20
gb|AFK47428.1| unknown [Lotus japonicus]                              101   1e-19
ref|XP_002298129.1| 2-oxoglutarate-dependent dioxygenase [Populu...   101   1e-19
emb|CAN80138.1| hypothetical protein VITISV_028512 [Vitis vinifera]   101   1e-19
ref|XP_004152262.1| PREDICTED: gibberellin 20 oxidase 1-B-like [...    99   9e-19

>ref|XP_002284968.1| PREDICTED: gibberellin 20 oxidase 3 [Vitis vinifera]
           gi|297743335|emb|CBI36202.3| unnamed protein product
           [Vitis vinifera]
          Length = 314

 Score =  103 bits (256), Expect = 4e-20
 Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 MCSVSSEKLPVIDFSGLDCTRSGTTSWCSVRTKVRQALGAYGCFEAIFDEIKF--HGEML 385
           M S +  KLPVIDFS  +  + GT  W  V+ +V++AL  YGCFEA F+++       + 
Sbjct: 1   MGSETPLKLPVIDFSDPEL-KPGTLQWNLVKAQVQKALEEYGCFEAFFNKVPLDLRKAIF 59

Query: 386 SALEELFGLPSETKAKYTAKNHFEGF-GSNPHM-LYESMGIDDVLVRERLQRVTDILWPE 559
            ALEELF LP +TK + ++K  + G+ G  P + LYESMGIDD LV+E+ +  T +LWPE
Sbjct: 60  GALEELFDLPLQTKLRNSSKKPYHGYVGQYPTVPLYESMGIDDALVQEKAEHFTKLLWPE 119

Query: 560 GNSGF 574
           GN  F
Sbjct: 120 GNPNF 124


>gb|AFK47428.1| unknown [Lotus japonicus]
          Length = 311

 Score =  101 bits (252), Expect = 1e-19
 Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 MCSVSSEKLPVIDFSGLDCTRSGTTSWCSVRTKVRQALGAYGCFEAIFDEIKF--HGEML 385
           M S ++ KLPVIDF+ L+       +W +V++KV +AL  YGCFEAIFD++      E+ 
Sbjct: 1   MGSETTRKLPVIDFTDLN----SLANWEAVKSKVHEALVEYGCFEAIFDKVPLDLRKEIF 56

Query: 386 SALEELFGLPSETKAKYTAKNHFEGF-GSNPHM-LYESMGIDDVLVRERLQRVTDILWPE 559
           ++LEELF LP +TK    +K  + G+ G  P + L+ESMGIDD  V E+++ + +ILWP+
Sbjct: 57  ASLEELFNLPLQTKLLNVSKKPYHGYVGQYPMVPLFESMGIDDANVSEKVEAMANILWPD 116

Query: 560 GNSGF 574
           GN  F
Sbjct: 117 GNPSF 121


>ref|XP_002298129.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa]
           gi|222845387|gb|EEE82934.1| 2-oxoglutarate-dependent
           dioxygenase [Populus trichocarpa]
          Length = 314

 Score =  101 bits (251), Expect = 1e-19
 Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 MCSVSSEKLPVIDFSGLDCTRSGTTSWCSVRTKVRQALGAYGCFEAIFDEIKFHGE--ML 385
           M S +  KLP+IDFS L     G   W  V+ +VR+AL  YGCFEA+FD+I       + 
Sbjct: 1   MGSETPLKLPIIDFSNLG-QNPGAAEWDLVKLQVRKALEEYGCFEALFDKIPAESRKAIF 59

Query: 386 SALEELFGLPSETKAKYTAKNHFEGF-GSNPHM-LYESMGIDDVLVRERLQRVTDILWPE 559
            A+EELF LP +TK +  +K  + G+ G  P + L+ESMGIDD  + E ++ +T ILWP+
Sbjct: 60  GAVEELFDLPLQTKMRNASKKPYHGYVGQYPQVPLFESMGIDDANIAEEVESMTTILWPQ 119

Query: 560 GNSGF 574
           GN  F
Sbjct: 120 GNQSF 124


>emb|CAN80138.1| hypothetical protein VITISV_028512 [Vitis vinifera]
          Length = 314

 Score =  101 bits (251), Expect = 1e-19
 Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 MCSVSSEKLPVIDFSGLDCTRSGTTSWCSVRTKVRQALGAYGCFEAIFDEIKF--HGEML 385
           M S +  KLP IDFS  +  + GT  W  V+ +V++AL  YGCFEA F+++       + 
Sbjct: 1   MGSETPLKLPXIDFSDPEL-KPGTLQWNLVKAQVQKALEEYGCFEAFFNKVPLDLRKAIF 59

Query: 386 SALEELFGLPSETKAKYTAKNHFEGF-GSNPHM-LYESMGIDDVLVRERLQRVTDILWPE 559
            ALEELF LP +TK + ++K  + G+ G  P + LYESMGIDD LV+E+ +  T +LWPE
Sbjct: 60  GALEELFDLPLQTKLRNSSKKPYHGYVGQYPTVPLYESMGIDDALVQEKAEHFTKLLWPE 119

Query: 560 GNSGF 574
           GN  F
Sbjct: 120 GNPNF 124


>ref|XP_004152262.1| PREDICTED: gibberellin 20 oxidase 1-B-like [Cucumis sativus]
           gi|449484307|ref|XP_004156846.1| PREDICTED: gibberellin
           20 oxidase 1-B-like [Cucumis sativus]
          Length = 314

 Score = 98.6 bits (244), Expect = 9e-19
 Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
 Frame = +2

Query: 212 MCSVSSEKLPVIDFSGLDCTRSGTTSWCSVRTKVRQALGAYGCFEAIFDEI--KFHGEML 385
           M S SS KLP+IDFS L+   SG   W   + +V++AL  +GCFEA FD++  +    + 
Sbjct: 1   MDSESSLKLPLIDFSNLE---SGGPKWELAKAQVKEALEEFGCFEASFDKVPVEVRKGLF 57

Query: 386 SALEELFGLPSETKAKYTAKNHFEGFGSNPHM--LYESMGIDDVLVRERLQRVTDILWPE 559
            ALEELF LP ETK +  ++  F G+     M  L+ESMG+DD  + +++Q  T+ILWP+
Sbjct: 58  EALEELFNLPLETKLRNVSQKPFHGYVGQYPMAPLFESMGVDDSTIPQKVQDFTNILWPQ 117

Query: 560 GNSGF 574
           GN  F
Sbjct: 118 GNPTF 122


Top